View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16593_low_3 (Length: 758)
Name: NF16593_low_3
Description: NF16593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16593_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 8e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 528 - 735
Target Start/End: Complemental strand, 8095193 - 8094987
Alignment:
| Q |
528 |
aataactgatttttt-atctctgagttcatctgctgcttctttctttcatggtttaatttttctttgatatgtgttataaagtgatcaataatatttatc |
626 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
8095193 |
aataactgatttttttatctctcagttcatctgctgcttctttctttcatggtttaatttttctctgatatgtgtta--aagtgatcaataatatttatc |
8095096 |
T |
|
| Q |
627 |
atgcagtgttttatcttaaaagaatcctaagttttttctaaaatgttattttctaaaaggaattgttctaaattaatcaatagaagtatttcctctttct |
726 |
Q |
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||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8095095 |
atgcaatgttttatcttaaaagaatcctaagtttttactagaatgttattttctaaaaggaattgttctaaattaatcaatagaagtatttcctctttct |
8094996 |
T |
|
| Q |
727 |
tttaaggcc |
735 |
Q |
| |
|
||||||||| |
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|
| T |
8094995 |
tttaaggcc |
8094987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 8096280 - 8096153
Alignment:
| Q |
9 |
tcgaagaatataaacatcaatatgaaggaagaaaaaggaagaaaaacacaaaatgttgtttaaattgacttactctggatgaaatagcaactcttaattc |
108 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8096280 |
tcgaacaaaataaacatcaatatgaaggaagaaaaaggaagaaaaacacaaaatgttgtttaaattgacttactctggatgaaaaagcaactcttaattc |
8096181 |
T |
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| Q |
109 |
attccactaatcaaaataataactttac |
136 |
Q |
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| T |
8096180 |
attccactaatcaaaagagtaactttac |
8096153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 560 - 735
Target Start/End: Complemental strand, 8100443 - 8100278
Alignment:
| Q |
560 |
ctgcttctttctttcatggtttaatttttctttgatatgtgttataaagtgatcaataatatttatcatgcagtgttttatcttaaaagaatcct-aagt |
658 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| | | |
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| T |
8100443 |
ctgcttctttctttcatagtttaatttttctctgatatgtgttacaaagtgatcaataatatttatcgtgca-tgttttatcttaaaagaatcctgattt |
8100345 |
T |
|
| Q |
659 |
tttttctaaaatgttattttctaaaaggaattgttctaaattaatcaatagaagtatttcctctttcttttaaggcc |
735 |
Q |
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|||||||| ||| | ||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
8100344 |
tttttctagaatatgattttctgaaaggaattg----------ctcaatagaagtatttcctctttcttctaaggcc |
8100278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 7308826 - 7308743
Alignment:
| Q |
110 |
ttccactaatcaaaataataactttacataaagattttgatagcaattacaataatcaatcttcaaacctaattctaccatttt |
193 |
Q |
| |
|
||||||||||||||| | |||||||||| | ||||| | | || |||||||| || ||||||||||||||||||||| |||||| |
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|
| T |
7308826 |
ttccactaatcaaaagagtaactttacaaagagattctaaaaggaattacaagaaccaatcttcaaacctaattctagcatttt |
7308743 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 735
Target Start/End: Complemental strand, 8106068 - 8105991
Alignment:
| Q |
658 |
ttttttctaaaatgttattttctaaaaggaattgttctaaattaatcaatagaagtatttcctctttcttttaaggcc |
735 |
Q |
| |
|
||||||||| | ||| ||||||| ||||||||||| ||||||| ||||||||||| ||||||||| ||||| |||| |
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| T |
8106068 |
ttttttctagactgtaattttctgaaaggaattgtcctaaattgtgcaatagaagtagttcctctttattttagggcc |
8105991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 7392849 - 7392922
Alignment:
| Q |
154 |
aattacaataatcaatcttcaaacctaattctaccattttttccgaatctcttcccgtgacaaatagactcaatg |
228 |
Q |
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| T |
7392849 |
aattacaagaatcagtcttcaaacctaattctacc-ttttttctaaatctctacccttgaccaagagactcaatg |
7392922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 31005232 - 31005193
Alignment:
| Q |
154 |
aattacaataatcaatcttcaaacctaattctaccatttt |
193 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |
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| T |
31005232 |
aattacaaaaatcattcttcaaacctaattctaccatttt |
31005193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 21334808 - 21334917
Alignment:
| Q |
113 |
cactaatcaaaataataactttacataaagattttgatagcaattacaataatcaatcttcaaacctaattctaccattttttccgaatctcttcccgtg |
212 |
Q |
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|||||||||| | | |||||||||| ||||||| | || |||||||| || || |||||||||||||||||||| |||| || ||||||||| |||| |
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| T |
21334808 |
cactaatcaagagagtaactttacacaaagattccaaaaggaattacaagaaccagtcttcaaacctaattctacc-cttttcccaaatctcttctcgtg |
21334906 |
T |
|
| Q |
213 |
acaaatagact |
223 |
Q |
| |
|
|| || ||||| |
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| T |
21334907 |
accaagagact |
21334917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 36681752 - 36681691
Alignment:
| Q |
125 |
taataactttacataaagattttgatagcaattacaataatcaatcttcaaacctaattcta |
186 |
Q |
| |
|
||||||||||||| ||||||| | || |||||||| ||||||||||||||| |||||||| |
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|
| T |
36681752 |
taataactttacacaaagattccaaaagaaattacaagaatcaatcttcaaacataattcta |
36681691 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 12777037 - 12776985
Alignment:
| Q |
154 |
aattacaataatcaatcttcaaacctaattctaccattttttccgaatctcttc |
207 |
Q |
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|||||||| |||||||||| ||||||||||||||| |||| | ||||||||||| |
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| T |
12777037 |
aattacaagaatcaatcttaaaacctaattctacccttttct-cgaatctcttc |
12776985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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