View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16594_high_2 (Length: 427)
Name: NF16594_high_2
Description: NF16594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16594_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 191 - 409
Target Start/End: Original strand, 48138433 - 48138651
Alignment:
| Q |
191 |
atgtagatacgtatttctctcattgaagaataagctttgttcagtactcattcactcactctagttagaaattggttatttgcatcttgttttaccagta |
290 |
Q |
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| T |
48138433 |
atgtagatacgtatttctctcattgaagaataagctttgttcagtactcattcactcactctagttagaaattggttatttgcatcttgttttaccagta |
48138532 |
T |
|
| Q |
291 |
gcatggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttattcaa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48138533 |
gcatggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttatacaa |
48138632 |
T |
|
| Q |
391 |
ttttcacttacactttgtt |
409 |
Q |
| |
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||||||||||||| ||||| |
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| T |
48138633 |
ttttcacttacacattgtt |
48138651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 48138236 - 48138379
Alignment:
| Q |
3 |
atgaattaaatctcatttatttatgctttaaaaaacgaagaatagattgcctaatttttaaatcatcaataaaataatgacaaacctttttattttgagg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48138236 |
atgaattaaatctcatttatttatgctttaaaaaacgaagaataggatgcctaatttttaaatcatcaataaaataatgacaaacctttttattttgagg |
48138335 |
T |
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| Q |
103 |
tggcagagcgaaaatggtt-aaaaaaggaatattgaggtggcag |
145 |
Q |
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| T |
48138336 |
tggcagagcgaaaatggttaaaaaaagaaatattgaggtggcag |
48138379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 397
Target Start/End: Complemental strand, 48126369 - 48126262
Alignment:
| Q |
292 |
catggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagt---tattattattactcatttcctttattc |
388 |
Q |
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||||||||||||||| || |||||||| | ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||||| | |
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| T |
48126369 |
catggcttgttggagacgtttcataacaaaactccgttattcaacccatcaacctccaaggcaggttagttactattattattattca-ttcctttatac |
48126271 |
T |
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| Q |
389 |
aattttcac |
397 |
Q |
| |
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||||||||| |
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| T |
48126270 |
aattttcac |
48126262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 193 - 409
Target Start/End: Original strand, 25251110 - 25251326
Alignment:
| Q |
193 |
gtagatacgtatttctctcattgaagaataagctttgttcagtactcattcactcactctagttagaaattggttatttgcatcttgttttaccagtagc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251110 |
gtagatacgtatttctctcattgaagaataagctttgttcagtactcactcactcactctagttagaaattggttatttgcatcttgttttaccagtagc |
25251209 |
T |
|
| Q |
293 |
atggcttgttggaggcgattcataacgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttattcaatt |
392 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25251210 |
atggcttgttggaggcgattcataatgcacctccgttattcaacccatcaatctccatggcaggttagttattattattactcatttcctttatacaatt |
25251309 |
T |
|
| Q |
393 |
ttcacttacactttgtt |
409 |
Q |
| |
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||||||||||| ||||| |
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| T |
25251310 |
ttcacttacacattgtt |
25251326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 25250924 - 25251043
Alignment:
| Q |
10 |
aaatctcatttatttatgctttaaaaaacgaagaatagattgcctaatttttaaatcatcaataaaataatgacaaacctttttattttgaggtggcaga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25250924 |
aaatctcatttatttatgctttaaaaaacgaagaataggatgcctaatttttaaatcatcaataaaataatgacaaa----------------tggcaga |
25251007 |
T |
|
| Q |
110 |
gcgaaaatggttaaaaaaggaatattgaggtggcag |
145 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25251008 |
gcgaaaatggttaaaaaaggaatattgaggtggcag |
25251043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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