View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16594_high_6 (Length: 329)

Name: NF16594_high_6
Description: NF16594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16594_high_6
NF16594_high_6
[»] chr2 (10 HSPs)
chr2 (12-329)||(30181434-30181748)
chr2 (25-284)||(30282107-30282363)
chr2 (9-138)||(30254517-30254646)
chr2 (19-198)||(30070629-30070806)
chr2 (9-215)||(30177390-30177592)
chr2 (32-266)||(30131125-30131360)
chr2 (32-266)||(30034946-30035178)
chr2 (32-266)||(30229084-30229316)
chr2 (32-145)||(30025519-30025632)
chr2 (32-145)||(30116490-30116603)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 30181748 - 30181434
Alignment:
Q  12 agggaagaagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatc 111  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||||||||||    
T  30181748 agggaagaagatgaatggcattggaatggtgatgttaacactactataaaacaattagtagcgaaaacggtaatatatacaaaatcaattatctccgatc 30181649  T
Q  112 atgattc-aaatgttatggcttgcattcccacattaattgctgtttctttt-tcttgttcatggatatccagaactctaaggatgattgtgattgtcctc 209  Q
    ||||||| |||||||||||||||||||| |||     ||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  30181648 atgattcaaaatgttatggcttgcattctcac----tttgctgttttttttctcttgttcatgaatatccagagctctaaggatgattgtgtttgtcctc 30181553  T
Q  210 aaaatttgattgaaggctcgagtggatgattcgtcgcaaccacctggtaatttagaactagcacattgggctttttatttattataatttcatgttcttc 309  Q
    |||| |||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30181552 aaaacttgattgaaggctcaagtagatgattcgtctcaaccacatggtaatttagaactagcacattgggctttttatttattat-atttcatgttcttc 30181454  T
Q  310 gatgtttttgtgttagtttc 329  Q
     ||  |||||||||||||||    
T  30181453 aataattttgtgttagtttc 30181434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 284
Target Start/End: Original strand, 30282107 - 30282363
Alignment:
Q  25 aatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaat-ggtaatatatacaaaatcaattatctccgatcatgattcaaatg 123  Q
    |||| ||||||||||||||| |||| |||||||| | |||| | |  |||||||  |||||| | ||| ||||  || |||||| |||||||||||||||    
T  30282107 aatgtcattggaatggtgacattaatactactataagaaaatttgctgcgaaaaaaggtaatgtttaccaaattgatcatctccaatcatgattcaaatg 30282206  T
Q  124 ttatggcttgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaa 223  Q
     ||| | |||||||| |||| |    | |||| |||||||||||| ||| |||||||||||||||||||||| || | ||||||||||||||||| ||||    
T  30282207 ctattgtttgcattctcacact----gttgttgctttttcttgtttatgaatatccagaactctaaggatgaatgagtttgtcctcaaaatttgaatgaa 30282302  T
Q  224 ggctcgagtggatgattcgtcgcaaccacctggtaatttagaactagcacattgggctttt 284  Q
    ||||| ||| ||| |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  30282303 ggctcaagtcgataattcctcgcaaccacctggtaattcagaatcagcacattgggctttt 30282363  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 30254517 - 30254646
Alignment:
Q  9 gtaagggaagaagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccg 108  Q
    |||| |||| ||||| | ||||||||||| |||||| |||| ||| | || | ||||   ||||| ||||||||||||||||||||||  ||||||||||    
T  30254517 gtaaaggaacaagatgactggcattggaacggtgaccttaatactgcaataagaaaatatgtagctaaaatggtaatatatacaaaattgattatctccg 30254616  T
Q  109 atcatgattcaaatgttatggcttgcattc 138  Q
    ||||| ||||||||||||||||||||||||    
T  30254617 atcataattcaaatgttatggcttgcattc 30254646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 30070629 - 30070806
Alignment:
Q  19 aagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaa--tatatacaaaatcaattatctccgatcatgat 116  Q
    ||||| |||||||||||||||||||| |||| |||||||| | |||| | ||||| |||| |||||  | ||||||||||| ||||||||| ||||  |     
T  30070629 aagatgaatggcattggaatggtgacattaatactactataagaaaatttgtagcaaaaacggtaatgtctatacaaaatcgattatctccaatcacaaa 30070728  T
Q  117 tcaaatgttatggc-ttgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattg 198  Q
    |||| |||||| || |||||||| ||||||  |||    | |||||||||||| ||| |||||||||||||||||||||||||    
T  30070729 tcaattgttatcgctttgcattctcacatt-gttg----tgctttttcttgtttatgaatatccagaactctaaggatgattg 30070806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 30177390 - 30177592
Alignment:
Q  9 gtaagggaagaagataaatggcattggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatat--atacaaaatcaattatctc 106  Q
    |||| ||||| |||| |||||||||||||||||||| |||| |||||||| | |||| | ||||| |||  |||||| |  |||||||||| ||  ||||    
T  30177390 gtaaaggaaggagatgaatggcattggaatggtgaccttaatactactataagaaaatttgtagctaaaccggtaatgtctatacaaaatctatg-tctc 30177488  T
Q  107 cgatcatgattcaaatgttatggcttgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtc 206  Q
    | ||||||||||||||||||| |||||||||| ||||||  |||    | | ||||||||||   |  ||||||||||||||||| |||||| | |||||    
T  30177489 caatcatgattcaaatgttatagcttgcattctcacatt-gttg----tgccttttcttgtttgcgagtatccagaactctaagggtgattgagtttgtc 30177583  T
Q  207 ctcaaaatt 215  Q
    |||||||||    
T  30177584 ctcaaaatt 30177592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 30131360 - 30131125
Alignment:
Q  32 ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct 131  Q
    ||||||||||||| ||||||||||||| |||||| | | || ||||| ||||||  |||||||||  ||||| ||| || |||  |||| | ||||||||    
T  30131360 ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct 30131261  T
Q  132 tgcattcccacattaa--ttgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaaggctcg 229  Q
    | ||||| |||||| |  ||||  ||| ||||| || ||  || |||| |||||||||| ||||||||  | ||||||||||| ||| | || ||| ||     
T  30131260 tccattctcacattgatgttgcctttttttttttttttttctgaatatacagaactctacggatgattaggtttgtcctcaaagttt-aatggagggtca 30131162  T
Q  230 agtggatgattcgtcgcaaccacctggtaatttagaa 266  Q
    | | ||| |||||| |||| |||||||||||| ||||    
T  30131161 actagataattcgttgcaatcacctggtaattcagaa 30131125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 30035178 - 30034946
Alignment:
Q  32 ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct 131  Q
    ||||||||||||| ||||||||||||| |||||| | | || ||||| ||||||  |||||||||  ||||| ||| || |||  |||| | ||||||||    
T  30035178 ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct 30035079  T
Q  132 tgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaaggctcgag 231  Q
    | ||||| |||||| | || ||  | ||| | || || ||| |||| |||||||||| ||||||||  | ||||||||||| ||| | || ||| || |     
T  30035078 tccattctcacattga-tgttgcctttttattttttttatgaatatacagaactctacggatgattaggtttgtcctcaaagttt-aatggagggtcaac 30034981  T
Q  232 tggatgattcgtcgcaaccacctggtaatttagaa 266  Q
    | ||| |||||| |||| |||||||||||| ||||    
T  30034980 tagataattcgttgcaatcacctggtaattcagaa 30034946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 30229316 - 30229084
Alignment:
Q  32 ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct 131  Q
    ||||||||||||| ||||||||||||| |||||| | | || ||||| ||||||  |||||||||  ||||| ||| || |||  |||| | ||||||||    
T  30229316 ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct 30229217  T
Q  132 tgcattcccacattaattgctgtttctttttcttgttcatggatatccagaactctaaggatgattgtgattgtcctcaaaatttgattgaaggctcgag 231  Q
    | ||||| |||||| | || ||  | ||| | || || ||| |||| |||||||||| ||||||||  | ||||||||||| ||| | || ||| || |     
T  30229216 tccattctcacattga-tgttgcctttttattttttttatgaatatacagaactctacggatgattaggtttgtcctcaaagttt-aatggagggtcaac 30229119  T
Q  232 tggatgattcgtcgcaaccacctggtaatttagaa 266  Q
    | ||| |||||| |||| |||||||||||| ||||    
T  30229118 tagataattcgttgcaatcacctggtaattcagaa 30229084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 30025519 - 30025632
Alignment:
Q  32 ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct 131  Q
    ||||||||||||| ||||||||||||| |||||| | | || ||||| ||||||  |||||||||  ||||| ||| || |||  |||| | ||||||||    
T  30025519 ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct 30025618  T
Q  132 tgcattcccacatt 145  Q
    | ||||| ||||||    
T  30025619 tccattctcacatt 30025632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 30116603 - 30116490
Alignment:
Q  32 ttggaatggtgacgttaacactactatcaaaaaactagtagcgaaaatggtaatatatacaaaatcaattatctccgatcatgattcaaatgttatggct 131  Q
    ||||||||||||| ||||||||||||| |||||| | | || ||||| ||||||  |||||||||  ||||| ||| || |||  |||| | ||||||||    
T  30116603 ttggaatggtgaccttaacactactataaaaaaaattgcagtgaaaagggtaatgcatacaaaattgattatatccaattatgtctcaacttttatggct 30116504  T
Q  132 tgcattcccacatt 145  Q
    | ||||| ||||||    
T  30116503 tccattctcacatt 30116490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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