View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16594_low_1 (Length: 538)

Name: NF16594_low_1
Description: NF16594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16594_low_1
NF16594_low_1
[»] chr2 (6 HSPs)
chr2 (18-355)||(9483951-9484290)
chr2 (365-532)||(9483613-9483780)
chr2 (242-316)||(4639994-4640068)
chr2 (242-316)||(34099067-34099141)
chr2 (241-318)||(13467434-13467511)
chr2 (250-303)||(13464710-13464763)
[»] chr6 (2 HSPs)
chr6 (242-318)||(20473487-20473563)
chr6 (250-308)||(8001337-8001395)
[»] chr3 (3 HSPs)
chr3 (241-316)||(3861151-3861226)
chr3 (250-308)||(35188971-35189029)
chr3 (261-306)||(49019534-49019579)
[»] chr7 (2 HSPs)
chr7 (242-316)||(37587447-37587521)
chr7 (250-308)||(46135152-46135210)
[»] chr4 (4 HSPs)
chr4 (242-316)||(36280263-36280337)
chr4 (250-308)||(50091291-50091349)
chr4 (253-308)||(11942586-11942641)
chr4 (250-292)||(10065294-10065336)
[»] chr1 (2 HSPs)
chr1 (242-316)||(37306357-37306431)
chr1 (241-308)||(5242586-5242653)
[»] chr5 (2 HSPs)
chr5 (250-308)||(1554776-1554834)
chr5 (261-308)||(9102340-9102387)
[»] chr8 (3 HSPs)
chr8 (258-318)||(15442392-15442452)
chr8 (254-318)||(15311439-15311503)
chr8 (254-318)||(15491808-15491872)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 9484290 - 9483951
Alignment:
Q  18 ttcctaataattgaga--ttagaggaaatgtatttcatacttccnnnnnnnttaatatatcttgcattttagtcgtatcaattatgaatcattctttcag 115  Q
    ||||||||||||||||  ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9484290 ttcctaataattgagagattagaggaaatgtatttcatacttccaaaaaaattaatatatcttgcattttagtcgtatcaattatgaatcattctttcag 9484191  T
Q  116 tattagttcttcatttcgtgtgaaacaattttcatccattttttcaacagaaattcacacccacgttgaagcatttgattttatattgtacgatattaaa 215  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  9484190 tattagttcttcatttcgtgtgaaataattttcatccattttttaaacagaaattcacacccacattgaagcatttgattttatattgtatgatattaaa 9484091  T
Q  216 tttattcgtagattaatttaacgaacagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagc 315  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9484090 tttattcgtagattaagttaacaaacagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagc 9483991  T
Q  316 attctttcttttattttaaatcgttctggtcctgcacgca 355  Q
    | | ||||||||||||||||||||||||||||||||||||    
T  9483990 aatttttcttttattttaaatcgttctggtcctgcacgca 9483951  T

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Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 365 - 532
Target Start/End: Complemental strand, 9483780 - 9483613
Alignment:
Q  365 tcatttatgtttggcacacctcttaataaatttttggtgtatcttttctacatacggtataacgagtttatcttatcttttagatgttttgtaagaaatg 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9483780 tcatttatgtttggcacacctcttaataaatttttggtgtatcttttctacatacagtataacgagtttatcttatcttttagatgttttgtaagaaatg 9483681  T
Q  465 gcaaaattacagcatattgttaggaataaattctttccagtaaaaatgtctcatgctttcttcattga 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9483680 gcaaaattacagcatattgttaggaataaattctttccagtaaaaatgtctcatgctttcttcattga 9483613  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 4640068 - 4639994
Alignment:
Q  242 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4640068 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 4639994  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 34099067 - 34099141
Alignment:
Q  242 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34099067 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 34099141  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 13467511 - 13467434
Alignment:
Q  241 cagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcatt 318  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  13467511 cagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcatt 13467434  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 13464763 - 13464710
Alignment:
Q  250 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaact 303  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  13464763 tagctcagttggttagagcacttgtttagtaagcgggaggtcttgaattcaact 13464710  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 20473563 - 20473487
Alignment:
Q  242 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcatt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20473563 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcatt 20473487  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 8001337 - 8001395
Alignment:
Q  250 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8001337 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 8001395  T

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Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 3861226 - 3861151
Alignment:
Q  241 cagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861226 cagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 3861151  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 35188971 - 35189029
Alignment:
Q  250 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35188971 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 35189029  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 49019579 - 49019534
Alignment:
Q  261 gttagagcacccgtttagtaagcgggaggtcttgagttcaactctc 306  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  49019579 gttagagcacctgtttagtaagcgggaggtcttgagttcaactctc 49019534  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 37587521 - 37587447
Alignment:
Q  242 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587521 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 37587447  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 46135152 - 46135210
Alignment:
Q  250 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46135152 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 46135210  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 36280263 - 36280337
Alignment:
Q  242 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36280263 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 36280337  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 50091291 - 50091349
Alignment:
Q  250 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50091291 tagctcagttggttagagcacctgtttagtaagcgggaggtcttgagttcaactctcaa 50091349  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 11942641 - 11942586
Alignment:
Q  253 ctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  11942641 ctcagttggttagatcacccgtttagtaagcgggacgtcttgagttcgactctcaa 11942586  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 10065294 - 10065336
Alignment:
Q  250 tagctcagttggttagagcacccgtttagtaagcgggaggtct 292  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  10065294 tagctcatttggttagagcacccgtttagtaagcgggaggtct 10065336  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 37306357 - 37306431
Alignment:
Q  242 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37306357 agctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagca 37306431  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 5242586 - 5242653
Alignment:
Q  241 cagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5242586 cagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 5242653  T

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Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 1554776 - 1554834
Alignment:
Q  250 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1554776 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 1554834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 9102340 - 9102387
Alignment:
Q  261 gttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102340 gttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 9102387  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 15442452 - 15442392
Alignment:
Q  258 ttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcatt 318  Q
    |||||||||||| |||| || ||||| |||||| |||| ||||||||| ||||||||||||    
T  15442452 ttggttagagcatccgtgtaataagcaggaggttttgaattcaactcttaatgaaagcatt 15442392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 15311503 - 15311439
Alignment:
Q  254 tcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcatt 318  Q
    |||||||||||||| | ||||||| | |||| ||||| |||| |||||||||||| || ||||||    
T  15311503 tcagttggttagagaatccgtttaatgagcgagaggttttgaattcaactctcaacgagagcatt 15311439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 15491872 - 15491808
Alignment:
Q  254 tcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcatt 318  Q
    |||||||||||||| | ||||||| | |||| ||||| |||| |||||||||||| || ||||||    
T  15491872 tcagttggttagagaatccgtttaatgagcgagaggttttgaattcaactctcaacgagagcatt 15491808  T

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