View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16594_low_3 (Length: 406)
Name: NF16594_low_3
Description: NF16594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16594_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 28035941 - 28035565
Alignment:
| Q |
11 |
gagtagcaaagggagagaatttgaagatcctgaaacaaaggcacaaatgaaagcaatggcagctagagctttatggcaattgtgtagaagaaatgttact |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035941 |
gagtatcaaagggagagaatttgaagatcctgaaacaaaggcacaaatgaaagcaatggcagctagagctttatggcaattgtgtagaagaaatgttact |
28035842 |
T |
|
| Q |
111 |
atttgtcatacaattacagaatcaagagctcttttgtgtttcgcggttttgttggaaaagggtacagatgatgtgcaacattattcagcaatggctttga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28035841 |
atttgtcatacaattacagaatcaagagctcttttgtgttttgcggttttgttggaaaagggtactgatgatgtgcaacattattcagcaatggctttga |
28035742 |
T |
|
| Q |
211 |
tggaaataacatctgtggcagcagaacatgcagaattgagacgctctgctttcaaaccaactgcccctgctgcaaaagctgtggtggaacagtttctcaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28035741 |
tggaaataacatctgtggcagcagaacatgcagaattgagacgttctgctttcaaaccaactgcccctgctgcaaaagctgtggtggaacagtttctcaa |
28035642 |
T |
|
| Q |
311 |
agttgtcgaaaaaggtgactccgaggatttgctcataccttgtgttaaagctattggtaacttagcgaggactttta |
387 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28035641 |
agttgttgaaaaaggtgactccgaggatttgctcataccttgtgttaaagctattggtaacttagcaaggactttta |
28035565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University