View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16594_low_5 (Length: 369)

Name: NF16594_low_5
Description: NF16594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16594_low_5
NF16594_low_5
[»] chr4 (3 HSPs)
chr4 (12-369)||(11119154-11119511)
chr4 (14-184)||(11119411-11119581)
chr4 (78-184)||(11119483-11119589)
[»] chr5 (11 HSPs)
chr5 (146-369)||(42124584-42124807)
chr5 (140-356)||(34239347-34239563)
chr5 (146-343)||(34231601-34231798)
chr5 (278-365)||(42129963-42130050)
chr5 (140-200)||(42118324-42118384)
chr5 (74-135)||(42124746-42124807)
chr5 (70-146)||(42118306-42118382)
chr5 (14-66)||(42124743-42124795)
chr5 (14-84)||(42118296-42118366)
chr5 (180-249)||(41712465-41712533)
chr5 (270-366)||(41570930-41571026)
[»] chr2 (2 HSPs)
chr2 (143-354)||(12249573-12249784)
chr2 (272-351)||(32680976-32681055)
[»] chr6 (1 HSPs)
chr6 (146-368)||(25521818-25522040)
[»] chr3 (1 HSPs)
chr3 (290-365)||(8524118-8524193)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 11119511 - 11119154
Alignment:
Q  12 atcttcaacaactcattcacttggatcttggatcgaattcatttagtggtcaaatactatcctcactttcaaaccttcaacaactcattcacctggatct 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  11119511 atcttcaacaacttattcacttggatcttggatcgaattcatttagtggtcaaatactatcctcattttcaaaccttcaacaactcattcacttggatct 11119412  T
Q  112 tagatggaattcatttaatggtcagataccatcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaata 211  Q
    | ||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  11119411 tggatggaattcatttagtggtcaaataccattctcactttcaaaccttcaacaacttattcacttggatatttcttccaatgcatttagcggtccaata 11119312  T
Q  212 ccagatgtgtttggtgggatgacaaaactgcaagaactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119311 ccagatgtgtttggtgggatgacaaaactgcaagaactcgacttagattataacaagttagaaggacaaattccatcatcattatttaacttgactcaac 11119212  T
Q  312 ttgttgcattagattgttctaataataaattagatggtcccctacccaacaaaattac 369  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  11119211 ttgttgcattaggttgttctaataataaattagatggtcccctgcccaacaaaattac 11119154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 11119581 - 11119411
Alignment:
Q  14 cttcaacaactcattcacttggatcttggatcgaattcatttagtggtcaaatactatcctcactttcaaaccttcaacaactcattcacctggatctta 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||||||||     
T  11119581 cttcaacaactcattcacttggatcttggatggaattcatttagtgatcaaataccatcctcactttcaaatcttcaacaacttattcacttggatcttg 11119482  T
Q  114 gatggaattcatttaatggtcagataccatcctcacttgcaaaccttcaacaacttattcacttggatctt 184  Q
    ||| ||||||||||| |||||| |||| ||||||| || |||||||||||||||| |||||||||||||||    
T  11119481 gatcgaattcatttagtggtcaaatactatcctcattttcaaaccttcaacaactcattcacttggatctt 11119411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 11119589 - 11119483
Alignment:
Q  78 tttcaaaccttcaacaactcattcacctggatcttagatggaattcatttaatggtcagataccatcctcacttgcaaaccttcaacaacttattcactt 177  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||| ||||||||||||||| |||| ||||||||||||||||||||    
T  11119589 tttcaaaccttcaacaactcattcacttggatcttggatggaattcatttagtgatcaaataccatcctcactttcaaatcttcaacaacttattcactt 11119490  T
Q  178 ggatctt 184  Q
    |||||||    
T  11119489 ggatctt 11119483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 146 - 369
Target Start/End: Complemental strand, 42124807 - 42124584
Alignment:
Q  146 tcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaag 245  Q
    |||||| ||||||||| |||||| |||||||||||||||   |  ||| ||||||  |||| ||| ||||||||||||||||||||||| ||||||||||    
T  42124807 tcactttcaaaccttcgacaactcattcacttggatcttgggtggaattcatttagtggtcaaatcccagatgtgtttggtgggatgaccaaactgcaag 42124708  T
Q  246 aactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattaga 345  Q
    ||||||| |||  |   ||||| |||||||||||||||||||| ||| |||||||||||||||| ||| |  |||||||||||     ||| ||||||||    
T  42124707 aactcgatttaacttccaacaatttagaaggacaaattccatcttcactatttaacttgactcagcttttcacattagattgtagaggtaacaaattaga 42124608  T
Q  346 tggtcccctacccaacaaaattac 369  Q
     |||||||||||||||||||||||    
T  42124607 gggtcccctacccaacaaaattac 42124584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 140 - 356
Target Start/End: Original strand, 34239347 - 34239563
Alignment:
Q  140 ccatcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaac 239  Q
    ||||||||| || ||||||||||| | || || |||||| |||||||   |||| || ||| ||||| ||| |||||||| |||||| ||||||| ||||    
T  34239347 ccatcctcattttcaaaccttcaaaatctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaac 34239446  T
Q  240 tgcaagaactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataa 339  Q
    |||||| | || |  ||| |  |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||| || |||||||    
T  34239447 tgcaagtattctatctagcttctaacaaattagaaggacaaattccatcttcattatttaacttgaatcaacttgttgatttagattgtgcttataataa 34239546  T
Q  340 attagatggtcccctac 356  Q
    |||||| ||||| ||||    
T  34239547 attagagggtccactac 34239563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 343
Target Start/End: Original strand, 34231601 - 34231798
Alignment:
Q  146 tcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaag 245  Q
    |||||| ||||||||| ||| || ||| ||||||||||||| | |||| |||| | ||||| ||| |||||||| ||||| |||||||| ||||||||||    
T  34231601 tcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcggtcaaattccagatgtatttggcgggatgaccaaactgcaag 34231700  T
Q  246 aactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaatta 343  Q
    |||||    || ||   ||||| |||| |||||||||||||   || |||||||| |||||||||||||||  ||| ||||||||  |||||||||||    
T  34231701 aactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagttgactcaacttgttagattcgattgttcatataataaatta 34231798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 42130050 - 42129963
Alignment:
Q  278 caaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcccctacccaacaaaa 365  Q
    ||||||||||| |||||||||||||||| |||||||  | |||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  42130050 caaattccatcttcattatttaacttgaatcaactttatacattagattgttctaaaaataaattagagggtcccatacccaacaaaa 42129963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 42118384 - 42118324
Alignment:
Q  140 ccatcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcattta 200  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  42118384 ccatcctcactttcaaaccttcaacaactcattcacttggatctttcttccaattcattta 42118324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 42124807 - 42124746
Alignment:
Q  74 tcactttcaaaccttcaacaactcattcacctggatcttagatggaattcatttaatggtca 135  Q
    |||||||||||||||| ||||||||||||| |||||||| | ||||||||||||| ||||||    
T  42124807 tcactttcaaaccttcgacaactcattcacttggatcttgggtggaattcatttagtggtca 42124746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 42118382 - 42118306
Alignment:
Q  70 atcctcactttcaaaccttcaacaactcattcacctggatcttagatggaattcatttaatggtcagataccatcct 146  Q
    |||||||||||||||||||||||||||||||||| ||||||||   |  |||||||||| |||||| || |||||||    
T  42118382 atcctcactttcaaaccttcaacaactcattcacttggatctttcttccaattcatttagtggtcaaatgccatcct 42118306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 42124795 - 42124743
Alignment:
Q  14 cttcaacaactcattcacttggatcttggatcgaattcatttagtggtcaaat 66  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  42124795 cttcgacaactcattcacttggatcttgggtggaattcatttagtggtcaaat 42124743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 42118366 - 42118296
Alignment:
Q  14 cttcaacaactcattcacttggatcttggatcgaattcatttagtggtcaaatactatcctcactttcaaa 84  Q
    |||||||||||||||||||||||||||   || |||||||||||||||||||| | ||||| ||| |||||    
T  42118366 cttcaacaactcattcacttggatctttcttccaattcatttagtggtcaaatgccatccttactctcaaa 42118296  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 41712465 - 41712533
Alignment:
Q  180 atctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaagaact 249  Q
    ||||||| | |||| |||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  41712465 atctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaact 41712533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 41570930 - 41571026
Alignment:
Q  270 tagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcccctacccaacaaaat 366  Q
    |||| |||||||| ||  ||||||| ||||||||| ||||||||| |   || ||||||||| ||||||||||| | ||||| ||||||||||||||    
T  41570930 tagacggacaaatcccgccatcattgtttaacttgtctcaacttgattactttgattgttcttataataaattaaagggtcctctacccaacaaaat 41571026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 143 - 354
Target Start/End: Complemental strand, 12249784 - 12249573
Alignment:
Q  143 tcctcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgc 242  Q
    |||||| || ||||||||||||  || |||||| |||||||||| | |||| |||||| ||||| |||||||||||||||| ||| |||||| |||||||    
T  12249784 tcctcattttcaaaccttcaacgtctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgc 12249685  T
Q  243 aagaactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaatt 342  Q
    |||||||| |  ||| |   ||||| ||| ||||||||||||| |  ||||||||||||||||||||||||||| |||||||||||||  |||| |||||    
T  12249684 aagaactcaatctagcttcaaacaaattacaaggacaaattccgttttcattatttaacttgactcaacttgttacattagattgttcgcataacaaatt 12249585  T
Q  343 agatggtcccct 354  Q
    ||| ||||||||    
T  12249584 agaaggtcccct 12249573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 32680976 - 32681055
Alignment:
Q  272 gaaggacaaattccatcatcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcc 351  Q
    |||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  32680976 gaaggagaaattccatattcattatttaacttgactcatcttgttgcattagattgttctcataataaattagagggtcc 32681055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 146 - 368
Target Start/End: Original strand, 25521818 - 25522040
Alignment:
Q  146 tcacttgcaaaccttcaacaacttattcacttggatctttcttccaatgcatttaccggtccaataccagatgtgtttggtgggatgacaaaactgcaag 245  Q
    |||||| ||||||||||||| || |||| |||||||||||| | |||| ||||||  |||| ||| ||||| ||||| ||||||||||| ||| ||||||    
T  25521818 tcactttcaaaccttcaacatctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagacgtgttcggtgggatgaccaaattgcaag 25521917  T
Q  246 aactcgacttagatcataacaagttagaaggacaaattccatcatcattatttaacttgactcaactt--gttgcattagattgttctaataataaatta 343  Q
    |||||||  || ||  |||||| ||||||||||| |||||||| || |||||||| ||||||   |||  ||||  ||| ||||||||||||||||||||    
T  25521918 aactcgatctatattttaacaaattagaaggacagattccatcttcgttatttaaattgactggtcttaagttg--ttatattgttctaataataaatta 25522015  T
Q  344 gatggtcccctacccaacaaaatta 368  Q
    || |||||  |||| ||||||||||    
T  25522016 gagggtcctttacctaacaaaatta 25522040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 8524193 - 8524118
Alignment:
Q  290 tcattatttaacttgactcaacttgttgcattagattgttctaataataaattagatggtcccctacccaacaaaa 365  Q
    |||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||| ||||||||||||    
T  8524193 tcattatttaacttgactcatcttgttactttagattgttctcataataaattagatggtcccttacccaacaaaa 8524118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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