View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16594_low_6 (Length: 369)
Name: NF16594_low_6
Description: NF16594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16594_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 38813993 - 38814235
Alignment:
| Q |
38 |
gcagctaattcagcttcaatattgaaaatcaaaataaagatgaatgaactgaaacatcaaaaaacaaaggcttctaactattcaaacttagactgctaaa |
137 |
Q |
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| T |
38813993 |
gcagctaattcagcttcaatattgaaaatcaaaataaagatgaatgaactgaaacatcaaaaaacaaaggcttctaactattcaaacttggactgctaaa |
38814092 |
T |
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| Q |
138 |
gttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtcgaaggggaagaactgtaaatc |
237 |
Q |
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| T |
38814093 |
gttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtcgaaggggaagaactgtaaatc |
38814192 |
T |
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| Q |
238 |
ctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
280 |
Q |
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| T |
38814193 |
ctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
38814235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 280
Target Start/End: Original strand, 38820573 - 38820736
Alignment:
| Q |
117 |
attcaaacttagactgctaaagttgtgcttaccagaacatatgtatccttttgaagatcaaatttcgaatttatttcaggcccccaggttccaaattgtc |
216 |
Q |
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| T |
38820573 |
attcaaacttggactgctaaagctgtacttacaagaacatatgtattcttttgaagatccaatttggtgtttatttcaggcacccaggttccaaattgaa |
38820672 |
T |
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| Q |
217 |
gaaggggaagaactgtaaatcctggcaaagatgcggtggtcctgtgtatgatgcgagaatcatt |
280 |
Q |
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| T |
38820673 |
ggaggggaagaaccataaatcctggcaaagacgctttgtccctgtgtataatgagagtatcatt |
38820736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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