View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16595_high_1 (Length: 546)
Name: NF16595_high_1
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16595_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 1506982 - 1507511
Alignment:
| Q |
1 |
acttctaatgcaagatcacaagcctagaattgaagatgatgatttcagaaaacgattgtcccaaaattggtcgaagacacatgccggttacaggcctcca |
100 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
1506982 |
acttctaatgcaaaatcacacgcctacaattgaagatgatgatttcagaaaacgaatgtcccaaaattggttgaagacacatgctggttataggcctcca |
1507081 |
T |
|
| Q |
101 |
gacaaatgtttgttccttgattcaaagtggagctctttcttgaatccaaccgatgggccttttatcaatgagtatttctatggacctaaaattgcaattt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1507082 |
gacaaatgtttgttctttgattcaaagtggagctctttcttgaatccaaccgatgggccttttatcaatgagtatttctacggacctaaaattgcaattt |
1507181 |
T |
|
| Q |
201 |
accagaaagaactcaatgcaataggggtcactagtgaagttgagaaggggtgctctttgcttgccgaccaccttaactctctctctgatcatggtaccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1507182 |
accagaaagaactcaatgcaataggggtcactagtgaagttgagaaggggtgctctttgcttgccgaccaccttaactctctctctgatcatggtaccat |
1507281 |
T |
|
| Q |
301 |
tgtgaaaatatataattacttatgtgaacacaattggaaacctgagaagagagaggcaaacaagatttggattcttgatggagataaaggtgatggtaag |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1507282 |
tgtgaaaatatataattacttatttgaacacaattggaaacctgagaagagagaggcaaacaagatttggattcttgatggagataaaggtggtggtaag |
1507381 |
T |
|
| Q |
401 |
tgggttgattctgaggaatgtgtcatacacgaccctgctaaacttttcggttcaaaattttatattcttgaagatatctatgatggcaatattcttgnnn |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1507382 |
tgggttgattctgaggaatgtgtcatacacgaccctgctaaacttttcggttcaaaattttatattcttgaagatatctatgatggcaatattcttgttt |
1507481 |
T |
|
| Q |
501 |
nnnngtatcttgcaatggaagtcaagaaca |
530 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1507482 |
ttttgtatcttgcaatggaagtcaagaaca |
1507511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 3012652 - 3013129
Alignment:
| Q |
1 |
acttctaatgcaagatcacaagcctagaattgaagatgatgatttcagaaaacgattgtcccaaaattggtcgaagacacatgccggttacaggcctcca |
100 |
Q |
| |
|
||||||||||| |||| ||||| || ||||||||||| ||||||||||| ||||||| ||||||||| ||||||| |||| ||||| | |||||| |
|
|
| T |
3012652 |
acttctaatgctagataacaagaatacaattgaagatg---atttcagaaaaagattgtcaaaaaattggttgaagacaaatgctggttataaacctcca |
3012748 |
T |
|
| Q |
101 |
gacaaatgtttgttccttgattcaaagtggagctctttcttgaatccaaccgatgggccttttatcaatgagtatttctatggacctaaaattgcaattt |
200 |
Q |
| |
|
|| || |||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| | || |||||||||||||||||||||| |
|
|
| T |
3012749 |
gagaagtgtttgttgtttgattccaagtggagttctttcttgaatccaactgatgggccttttattgatgagaaattttatggacctaaaattgcaattt |
3012848 |
T |
|
| Q |
201 |
accagaaagaactcaatgcaataggggtcactagtgaagttgagaaggggtgctctttgcttgccgaccaccttaactctctctctgatcatggtaccat |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
3012849 |
tccagaaagaactgaatgcaataggggtcactagtgaagttgagaagggttgctccttgcttgccagtcaccttgactctctctctgatcatgataccat |
3012948 |
T |
|
| Q |
301 |
tgtgaaaatatataattacttatgtgaacacaattggaaacctgagaagagagaggcaaacaagatttggattcttgatggagataaaggtgatggtaag |
400 |
Q |
| |
|
| |||||||||| || || |||||| ||||||| ||||||||||| ||| || ||||| ||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
3012949 |
tttgaaaatatacaagtatttatgtcaacacaactggaaacctgacgagaaagctgcaaaaaagatttggattcttgatggaattgtagg---tggtaag |
3013045 |
T |
|
| Q |
401 |
tgggttgattctgaggaatgtgtcatacacgaccctgctaaacttttcggttcaaaattttatattcttgaagatatctatgat |
484 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||| |||||||| ||||| || | ||||||||||||||| |
|
|
| T |
3013046 |
tgggttgattctgaagaatgcatcgtacacgaccctgctaaactttttggttcaaagttttacgttttagaagatatctatgat |
3013129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 38 - 483
Target Start/End: Complemental strand, 2930093 - 2929651
Alignment:
| Q |
38 |
gatgatttcagaaaacgattgtcccaaaattggtcgaagacacatgccggttacaggcctccagacaaatgtttgttccttgattcaaagtggagctctt |
137 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||||||||||| ||||| ||| ||||||| || |||||||| ||| ||| |||||||| |||| |
|
|
| T |
2930093 |
gatgatttcagaggaagattgtcccaaaattggttgaagacacatgctggttataggtctccagagaagtgtttgttgtttggttccaagtggagttctt |
2929994 |
T |
|
| Q |
138 |
tcttgaatccaaccgatgggccttttatcaatgagtatttctatggacctaaaattgcaatttaccagaaagaactcaatgcaataggggtcactagtga |
237 |
Q |
| |
|
| ||||||||||| ||||| |||||||| ||||| |||| |||||||| || |||||| ||| ||||||||||||||| || |||||||||| |||||| |
|
|
| T |
2929993 |
tattgaatccaactgatggaccttttatagatgagaatttttatggaccaaatattgcatttttccagaaagaactcaacgcgataggggtcattagtga |
2929894 |
T |
|
| Q |
238 |
agttgagaaggggtgctctttgcttgccgaccaccttaactctctctctgatcatggtaccattgtgaaaatatataattacttatgtgaacacaattgg |
337 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||| | ||||||||||||||| |||||||||||||||||| || | |||| | || |||| ||| |
|
|
| T |
2929893 |
agttgaaaaggggtgctccttgcttgccagtcaccttgatactctctctgatcatgataccattgtgaaaatatacaagtttttatatcaatacaactgg |
2929794 |
T |
|
| Q |
338 |
aaacctgagaagagagaggcaaacaagatttggattcttgatggagataaaggtgatggtaagtgggttgattctgaggaatgtgtcatacacgaccctg |
437 |
Q |
| |
|
||| ||||| ||| | ||||| ||| ||||||||||||||||| |||||| |||||||| ||||||||| | ||||| ||| |||| ||||||| |
|
|
| T |
2929793 |
aaagctgaggagaatgctgcaaagaaggtttggattcttgatggaattaaagg---tggtaagttcgttgattctaaagaatgcgtcttacatgaccctg |
2929697 |
T |
|
| Q |
438 |
ctaaacttttcggttcaaaattttatattcttgaagatatctatga |
483 |
Q |
| |
|
| |||||||| |||||||| |||||| |||| |||||||||||||| |
|
|
| T |
2929696 |
ccaaactttttggttcaaagttttatgttctagaagatatctatga |
2929651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 38 - 497
Target Start/End: Complemental strand, 2946731 - 2946275
Alignment:
| Q |
38 |
gatgatttcagaaaacgattgtcccaaaattggtcgaagacacatgccggttacaggcctccagacaaatgtttgttccttgattcaaagtggagctctt |
137 |
Q |
| |
|
|||||||||| |||| |||||||| |||| |||| |||||||||||| ||||| ||||||||||| || | | |||| || |||| |||||||| |||| |
|
|
| T |
2946731 |
gatgatttcaaaaaaagattgtccaaaaaatggttgaagacacatgctggttataggcctccagagaagtctctgttgtttaattccaagtggagttctt |
2946632 |
T |
|
| Q |
138 |
tcttgaatccaaccgatgggccttttatcaatgagtatttctatggacctaaaattgcaatttaccagaaagaactcaatgcaataggggtcactagtga |
237 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||| ||| ||||||||| |||||| ||||||| ||||||||| ||| |||||||||| |||||| |
|
|
| T |
2946631 |
tctttaatccaactaatgggccttttattgatgagagtttttatggacctgaaattgtcctttaccataaagaactcgctgccataggggtcattagtga |
2946532 |
T |
|
| Q |
238 |
agttgagaaggggtgctctttgcttgccgaccaccttaactctctctctgatcatggtaccattgtgaaaatatataattacttatgtgaacacaattgg |
337 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||||| | || || |||||||||| | |||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
2946531 |
agttgagaaagggtgctctttgcttgccaatcaccttgagtccctatctgatcatgacagtattgtgaaaatatacaagtacttatgtgaacacaactgg |
2946432 |
T |
|
| Q |
338 |
aaacctgagaagagagaggcaaacaagatttggattcttgatggagataaaggtgatggtaagtgggttgattctgaggaatgtgtcatacacgaccctg |
437 |
Q |
| |
|
||||| ||| ||| || ||||| ||| |||||||||| |||| | |||| | ||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
2946431 |
aaaccggaggagacagctgcaaaaaaggtttggattctggatgcaattaaaag---tggtaagtgggttgattctgaagaatgcatcatacacgacccac |
2946335 |
T |
|
| Q |
438 |
ctaaacttttcggttcaaaattttatattcttgaagatatctatgatggcaatattcttg |
497 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||||||| |||||||| | ||||||||| |
|
|
| T |
2946334 |
ctaaactttttggttcaaaatattatgttcttgaagatctctatgatagagatattcttg |
2946275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 37795576 - 37795345
Alignment:
| Q |
35 |
gatgatgatttcagaaaacgattgtcccaaaattggtcgaagacacatgccggttacaggcctccagacaaatgtttgttccttgattcaaagtggagct |
134 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| |||||||||||| ||||| |||||||||| | |||||| | || |||| |||||||| | |
|
|
| T |
37795576 |
gatgatgagttcagaaagagattgtccagaaattggttgaagacacatgctggttataggcctccagggatgtgtttgctgtttaattccaagtggagtt |
37795477 |
T |
|
| Q |
135 |
ctttcttgaatccaaccgatgggccttttatcaatgagtatttctatggacctaaaattgcaatttaccagaaagaactcaatgcaataggggtcactag |
234 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||| |||| |||||||||||||| ||| || |||||||||| |||||||||| || ||||| | |
|
|
| T |
37795476 |
ctttctttaatccaactgatgggccttttattgatgcaaatttttatggacctaaaatagcatctttccagaaagaattcaatgcaatcggtgtcaccac |
37795377 |
T |
|
| Q |
235 |
tgaagttgagaaggggtgctctttgcttgccg |
266 |
Q |
| |
|
||| | ||||| || ||||| |||||||||| |
|
|
| T |
37795376 |
tgacctagagaaaggatgctccttgcttgccg |
37795345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 64 - 262
Target Start/End: Complemental strand, 2920665 - 2920467
Alignment:
| Q |
64 |
aaattggtcgaagacacatgccggttacaggcctccagacaaatgtttgttccttgattcaaagtggagctctttcttgaatccaaccgatgggcctttt |
163 |
Q |
| |
|
|||||||| |||||| ||| ||||| ||||||||||| | |||||||| ||||||| |||||||| |||||||| |||||||| || || |||||| |
|
|
| T |
2920665 |
aaattggttaaagacaagtgctggttataggcctccagagatgtgtttgttgtttgattccaagtggagttctttctttaatccaactgacggacctttt |
2920566 |
T |
|
| Q |
164 |
atcaatgagtatttctatggacctaaaattgcaatttaccagaaagaactcaatgcaataggggtcactagtgaagttgagaaggggtgctctttgctt |
262 |
Q |
| |
|
|| |||| |||| |||||| ||| || ||| || ||||||||||||| ||||||||| ||||||| |||| | ||||| |||||||| |||||| |
|
|
| T |
2920565 |
attgatgaaaatttttatggaattaagatagcatctttccagaaagaactcggtgcaataggagtcactattgaactagagaaagggtgctccttgctt |
2920467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 37795096 - 37795020
Alignment:
| Q |
410 |
tctgaggaatgtgtcatacacgaccctgctaaacttttcggttcaaaattttatattcttgaagatatctatgatgg |
486 |
Q |
| |
|
||||| ||||| ||||||| ||||||| ||| ||||| |||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
37795096 |
tctgaagaatgcatcatacatgaccctgataagctttttggtttaaaattctatgttcttgaagatatctatgatgg |
37795020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 2920217 - 2920157
Alignment:
| Q |
423 |
tcatacacgaccctgctaaacttttcggttcaaaattttatattcttgaagatatctatga |
483 |
Q |
| |
|
||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
2920217 |
tcatacatgacccagataaactttttagattaaaattttatgttcttgaagatatctatga |
2920157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 141 - 497
Target Start/End: Original strand, 4916473 - 4916829
Alignment:
| Q |
141 |
tgaatccaaccgatgggccttttatcaatgagtatttctatggacctaaaattgcaatttaccagaaagaactcaatgcaataggggtcactagtgaagt |
240 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4916473 |
tgaatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggggtcattggtgaagt |
4916572 |
T |
|
| Q |
241 |
tgagaaggggtgctctttgcttgccgaccaccttaactctctctctgatcatggtaccattgtgaaaatatataattacttatgtgaacacaattggaaa |
340 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| | |||||||||||||||| || |||||||||||||||| ||||||| |||||| || |||||| |
|
|
| T |
4916573 |
tgagaaggggtgctccttgcttgccagtcaccttgattctctctctgatcatgataatattgtgaaaatatatatgtacttatttgaacagaactggaaa |
4916672 |
T |
|
| Q |
341 |
cctgagaagagagaggcaaacaagatttggattcttgatggagataaaggtgatggtaagtgggttgattctgaggaatgtgtcatacacgaccctgcta |
440 |
Q |
| |
|
||| || ||| | ||||| ||||||||| |||| |||||| ||||| || ||||||||||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
4916673 |
cctaaggagaaatctgcaaaaaagatttgggttctggatgga-ataaa--tggtggtaagtgggttgattctgaagaatgtatcatacatgaccctgcta |
4916769 |
T |
|
| Q |
441 |
aactttt---cggttcaaaattttatattcttgaagatatctatgatggcaatattcttg |
497 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
4916770 |
aactttttgctggttcaaaattttattttcttgaagatatctatgatagtaatattcttg |
4916829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 28024583 - 28024387
Alignment:
| Q |
35 |
gatgatgatttcagaaaacgattgtcccaaaattggtcgaagacacatgccggttacaggcctccagacaaatgtttgttccttgattcaaagtggagct |
134 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| |||||| ||||| ||||| ||||||||||| | |||||| | || |||| |||||||| | |
|
|
| T |
28024583 |
gatgatgagttcaggaagagattgtccaggaattggttgaagacgcatgctggttataggcctccagagatgtgtttgctgtttaattccaagtggagtt |
28024484 |
T |
|
| Q |
135 |
ctttcttgaatccaaccgatgggccttttatcaatgagtatttctatggacctaaaattgcaatttaccagaaagaactcaatgcaataggggtcac |
231 |
Q |
| |
|
||||||| |||| ||| ||||||||||| | ||| |||| ||||| |||| ||| ||| || |||||||||| ||||||||||||| ||||| |
|
|
| T |
28024483 |
ctttctttaatcaaactgatgggcctttcgttgatgcaaatttttatggtcctacaatagcatctttccagaaagaattcaatgcaataggtgtcac |
28024387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 484
Target Start/End: Complemental strand, 28024109 - 28024035
Alignment:
| Q |
410 |
tctgaggaatgtgtcatacacgaccctgctaaacttttcggttcaaaattttatattcttgaagatatctatgat |
484 |
Q |
| |
|
||||| ||||| ||||||| ||||||| ||| ||||| |||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
28024109 |
tctgaagaatgcatcatacatgaccctgataagctttttggtttaaaattctatgttcttgaagatatctatgat |
28024035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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