View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16595_high_10 (Length: 291)

Name: NF16595_high_10
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16595_high_10
NF16595_high_10
[»] chr3 (6 HSPs)
chr3 (18-274)||(39918942-39919199)
chr3 (83-169)||(39916473-39916559)
chr3 (85-169)||(33801029-33801113)
chr3 (83-169)||(39624633-39624719)
chr3 (107-169)||(26662908-26662970)
chr3 (30-72)||(39624355-39624397)
[»] chr7 (4 HSPs)
chr7 (84-169)||(39303966-39304051)
chr7 (85-169)||(23259704-23259788)
chr7 (86-156)||(23259933-23260003)
chr7 (18-72)||(23260340-23260394)
[»] chr5 (3 HSPs)
chr5 (84-169)||(12903194-12903279)
chr5 (85-169)||(26591315-26591399)
chr5 (85-169)||(26599436-26599520)
[»] chr1 (3 HSPs)
chr1 (84-169)||(10450663-10450748)
chr1 (85-169)||(31412166-31412249)
chr1 (85-169)||(7147394-7147478)
[»] chr8 (7 HSPs)
chr8 (81-169)||(9944201-9944289)
chr8 (85-169)||(37699520-37699604)
chr8 (85-169)||(37694997-37695081)
chr8 (81-169)||(34580862-34580949)
chr8 (85-169)||(37683114-37683198)
chr8 (81-169)||(39570784-39570871)
chr8 (91-169)||(34578125-34578202)
[»] scaffold0856 (1 HSPs)
scaffold0856 (85-169)||(2601-2685)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 39918942 - 39919199
Alignment:
Q  18 atgaaaagaaaattgtgttccaatcttaagacccgatctgaaggaaatgtggcacnnnnnnnntt-gttggggtgagagaggctcaaactctcgacctca 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||    
T  39918942 atgaaaagaaaattgcgttccaatcttaagacccgatctgaaggaaatgtggcacaaaaaaaaatcgttggggtgagagaggctcaaactctcgacctca 39919041  T
Q  117 ggattactcagaagctatgagacctacgcactggccaattgcgccaccaccccccaatattatcaaattgaagctcatcatctatatactaaaattacta 216  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39919042 ggattactcagaagctatgagacctacgcactggccaactgcgccaccaccccccaatattatcaaattgaagctcatcatctatatactaaaattacta 39919141  T
Q  217 taatatcaacaattatacaaacacaattatttacgggagtggtggaagattacaaaag 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39919142 taatatcaacaattatacaaacacaattatttacgggagtggtggaagattacaaaag 39919199  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 39916473 - 39916559
Alignment:
Q  83 gttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  39916473 gttggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 39916559  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 33801029 - 33801113
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  33801029 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 33801113  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 39624633 - 39624719
Alignment:
Q  83 gttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||    
T  39624633 gttggggtgagagaggctcgaactctcgacctcaggattactcagcagctatgagacctacgcgctagccaactgcgccaccacccc 39624719  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 26662970 - 26662908
Alignment:
Q  107 ctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    |||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||||||    
T  26662970 ctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 26662908  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 39624355 - 39624397
Alignment:
Q  30 ttgtgttccaatcttaagacccgatctgaaggaaatgtggcac 72  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  39624355 ttgtgatccaatcttaagacccgatctgaaggaaatgtggcac 39624397  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 39304051 - 39303966
Alignment:
Q  84 ttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  39304051 ttggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 39303966  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 23259788 - 23259704
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  23259788 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 23259704  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 23260003 - 23259933
Alignment:
Q  86 ggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaatt 156  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || |||||||    
T  23260003 ggggtgagagaggctcgaactctcgaccacaggattactcagaagctatgagacctacgcgctagccaatt 23259933  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 23260394 - 23260340
Alignment:
Q  18 atgaaaagaaaattgtgttccaatcttaagacccgatctgaaggaaatgtggcac 72  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  23260394 atgataagaaaattgtgttccaatcctaagacccgatctgaaggaaatgtcgcac 23260340  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 12903279 - 12903194
Alignment:
Q  84 ttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  12903279 ttggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 12903194  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 26591399 - 26591315
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  26591399 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 26591315  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 26599436 - 26599520
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  26599436 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 26599520  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 10450748 - 10450663
Alignment:
Q  84 ttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  10450748 ttggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 10450663  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 31412166 - 31412249
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  31412166 tggggtgagagaggctcaaactctcgacctcaggattact-agaagctatgagacctacgcgctagccaactgcgccaccacccc 31412249  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 7147394 - 7147478
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||||||    
T  7147394 tggggtgagagaggctcgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 7147478  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 9944201 - 9944289
Alignment:
Q  81 ttgttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||    
T  9944201 ttgttggggtgagagaggctcgaactctcgacctcaggatcactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 9944289  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 37699604 - 37699520
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||||||||||||||    
T  37699604 tggggtgagagaggctcaaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 37699520  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 37695081 - 37694997
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||| ||||||    
T  37695081 tggggtgagagaggctcgaactctcgacctcaggatcactcagaagctatgagacctacgcgctagccaactgcgccatcacccc 37694997  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 34580862 - 34580949
Alignment:
Q  81 ttgttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||   ||||||||||||||||| || ||||| ||||||||||||||    
T  34580862 ttgttggggtgagagaggctcgaactctcgacctcaggataactc-ttagctatgagacctacgcgctagccaactgcgccaccacccc 34580949  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 37683198 - 37683114
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||  |||||||||||||||||| |||||| ||||||||||||||||| || ||||| ||| ||||||||||    
T  37683198 tggggtgagagaggcttgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcaccaccacccc 37683114  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 39570871 - 39570784
Alignment:
Q  81 ttgttggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||   ||||||||||||||||| || ||||| ||||||||||||||    
T  39570871 ttgttggggtgagagaggctcgaactctcgacctcaggataactc-ttagctatgagacctacgcgctagccaactgcgccaccacccc 39570784  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 34578125 - 34578202
Alignment:
Q  91 gagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||| |||||||||||||||||| ||||  | |||||||||||||| |||| ||||| ||||||||||||||    
T  34578125 gagagaggctcgaactctcgacctcaggataactctta-gctatgagacctacacactagccaactgcgccaccacccc 34578202  T

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Target: scaffold0856 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 2601 - 2685
Alignment:
Q  85 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaattgcgccaccacccc 169  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||    
T  2601 tggggtgagagaggctcgaactctcgacctcaggataactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 2685  T

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