View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16595_high_4 (Length: 415)
Name: NF16595_high_4
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16595_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 31638533 - 31638260
Alignment:
| Q |
11 |
tggcatggctcattagttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatctctagtaagagtatagttttg |
110 |
Q |
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| T |
31638533 |
tggcatggctcattagttctaacaaaaaagtacaaaatgaatcaaggagaagagtcaagtcgttcgatatatcactatcactagtaagagtatagttttg |
31638434 |
T |
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| Q |
111 |
gaattaataggtttttctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgcttcaacgtg |
210 |
Q |
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| T |
31638433 |
gaattaataggtttttctctaaactcagcacaagatatgcaggaaaagaaaaagaagcattttctttcttgttcaacagcgatgtatctgcttcaacgtg |
31638334 |
T |
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| Q |
211 |
aatcaatggtgctactaaagacaggtaattcttcatatagtttttcttgtattttcactggatcttagttacta |
284 |
Q |
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| T |
31638333 |
aatcaatggtgctactaaagacaggtaattcttcatatagtttttcttgtattttcactggatcttagttacta |
31638260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 31638193 - 31638160
Alignment:
| Q |
365 |
atcatcacttgtctttttaagatgcggataatat |
398 |
Q |
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| T |
31638193 |
atcatcacttgtctttttaagatgcggataatat |
31638160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 31671429 - 31671532
Alignment:
| Q |
184 |
caacagcgatgtatctgcttcaacgtgaatcaatggtgctactaaagac--aggtaattcttcata-tagtttttcttgtattttcactggatcttagtt |
280 |
Q |
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| T |
31671429 |
caacagcgatgtctctccttcaacgtgaatcaaaggtaatactaaatacataggtaattcattacattagtttttgttatgttttgactggatcttagtt |
31671528 |
T |
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| Q |
281 |
acta |
284 |
Q |
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|||| |
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| T |
31671529 |
acta |
31671532 |
T |
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