View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16595_high_5 (Length: 390)
Name: NF16595_high_5
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16595_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 173 - 372
Target Start/End: Complemental strand, 2176388 - 2176189
Alignment:
| Q |
173 |
gttttacttctaagaacaatttattcgagtcaatcagttaattattgattttcttgacattggaactgggcaatggaattggccaactttctatttatga |
272 |
Q |
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| T |
2176388 |
gttttacttctaagaacaatttattcgagtcaatcagttaattattgattttcttgacattggaactgggcaatggaattggccaactttctatttatga |
2176289 |
T |
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| Q |
273 |
tgatctgaatgatttggtttgacaaaagcatgttattttttagggaaggcttcccttcttgagcgttttatacatagataattttcagttatgtggtaga |
372 |
Q |
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| T |
2176288 |
tgatctgaatgatttggtttgacaaaagcctgttattttttagggaaggcttcccttcttgagcgttttatacatagataattttcagttatgtggtaga |
2176189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 2176550 - 2176453
Alignment:
| Q |
11 |
cagagaaatgctaatttgatatcttatcaatttcaatatgaaagtagttttagcaacatnnnnnnntgactgataatttgtattttcaacatctaact |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
2176550 |
cagagaaatgctaatttgatatcttatcaatttcaatatgaaagtagttttagcaacataaaaaaatgactgataatttgtcttttcaacatctaact |
2176453 |
T |
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