View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16595_low_1 (Length: 603)

Name: NF16595_low_1
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16595_low_1
NF16595_low_1
[»] chr5 (7 HSPs)
chr5 (41-494)||(36599845-36600320)
chr5 (490-585)||(36599718-36599814)
chr5 (10-43)||(36600355-36600388)
chr5 (157-209)||(36060765-36060817)
chr5 (175-228)||(32892146-32892198)
chr5 (434-482)||(756924-756972)
chr5 (157-209)||(7630646-7630698)
[»] chr3 (4 HSPs)
chr3 (419-495)||(33309935-33310011)
chr3 (432-486)||(33309682-33309736)
chr3 (414-495)||(49745736-49745817)
chr3 (452-496)||(31993629-31993673)
[»] chr7 (4 HSPs)
chr7 (167-209)||(15998815-15998857)
chr7 (167-209)||(14584945-14584987)
chr7 (429-495)||(15998820-15998886)
chr7 (429-495)||(14584950-14585016)
[»] chr1 (1 HSPs)
chr1 (429-482)||(10840483-10840535)
[»] chr4 (2 HSPs)
chr4 (429-482)||(17947286-17947339)
chr4 (157-209)||(38851981-38852033)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 41 - 494
Target Start/End: Complemental strand, 36600320 - 36599845
Alignment:
Q  41 atttatttattttaatgatacaaggaaatcatttcagttttcttatgaaagacagagaaacagagaagaagcaaaggaa------------------aat 122  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                  |||    
T  36600320 atttatttattttaatgaaacaaggaaatcatttcagttttcttatgaaagacagagaaacagagaagaaacaaaggaaccacacacatacttttaaaat 36600221  T
Q  123 gacataatatttattttataaatttatttggagttaa----gttcttggtctctaaaaatatagtaaatttggattttagtccctaaaaaactgagatgt 218  Q
    ||||||||||||||||||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36600220 gacataatatttattttataaatttatttagagttaaataagttcttggtctctaaaaatatagtaaatttggattttagtccctaaaaaactgagatgt 36600121  T
Q  219 tttcaccctcggaaaatttattttccgttttgtttttggtcactataggacataatttagacatgtccttgacatttcttgaacaaaatatgtgcataca 318  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36600120 tttcaccctcggaaaatttgttttccgttttgtttttggtcactataggacataatttagacatgtccttgacatttcttgaacaaaatatgtgcataca 36600021  T
Q  319 gggattaaacataatagctgaacataacttagaaacattttgaagatacaagggtcataacctaatatgagcataaagtagcgattagggacaagaaatg 418  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36600020 ggggttaaacataatagctgaacataacttagaaacattttgaagatacaagagtcataacctaatatgagcataaagtagcgattagggacaagaaatg 36599921  T
Q  419 aaatggaatgttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatattt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36599920 aaatggaatgttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatattt 36599845  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 490 - 585
Target Start/End: Complemental strand, 36599814 - 36599718
Alignment:
Q  490 tatttattttgaattaactatgcatatatttcttatacaaattaaaaggaaatgg-ctggctagtaaaatgaaaattaagaacgtatagtaagatct 585  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36599814 tatttattttgaattagctatgcatatatttcttatacaaattaaaaggaaatggactggctagtaaaatgaaaattaagaacgtatagtaagatct 36599718  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 36600388 - 36600355
Alignment:
Q  10 cacagactgcatcaaaaatcatatattttgcatt 43  Q
    ||||||||||||||||||||||||||||||||||    
T  36600388 cacagactgcatcaaaaatcatatattttgcatt 36600355  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 36060817 - 36060765
Alignment:
Q  157 taagttcttggtctctaaaaatatagtaaatttggattttagtccctaaaaaa 209  Q
    |||||| || || |||||||||||||| ||||| |||||||||||||||||||    
T  36060817 taagtttttcgtttctaaaaatatagtgaattttgattttagtccctaaaaaa 36060765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 32892146 - 32892198
Alignment:
Q  175 aaatatagtaaatttggattttagtccctaaaaaactgagatgttttcaccctc 228  Q
    |||||| |||||||| ||||||||||| ||||||| ||||||||||||| ||||    
T  32892146 aaatatggtaaattttgattttagtccataaaaaa-tgagatgttttcatcctc 32892198  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 756924 - 756972
Alignment:
Q  434 tgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaatt 482  Q
    ||||| |||||||||  |||||||||||| ||||||| |||||||||||    
T  756924 tgaggatgaaaacattgcgttttattttttagagactaaaatcaaaatt 756972  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 7630698 - 7630646
Alignment:
Q  157 taagttcttggtctctaaaaatatagtaaatttggattttagtccctaaaaaa 209  Q
    |||||| || ||||||| |||||||  |||||| |||||||||||||||||||    
T  7630698 taagtttttcgtctctataaatatatcaaattttgattttagtccctaaaaaa 7630646  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 495
Target Start/End: Original strand, 33309935 - 33310011
Alignment:
Q  419 aaatggaatgttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatattta 495  Q
    ||||| ||| |||||||||| |||||||| |||||||||||||| || |||| |||| ||||||| |||||||||||    
T  33309935 aaatgaaattttttgtgaggatgaaaacaccccgttttattttttagggactaaaataaaaattcgctatatattta 33310011  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 486
Target Start/End: Complemental strand, 33309736 - 33309682
Alignment:
Q  432 tgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcact 486  Q
    ||||||| ||||||||||||||||||||||| || |||| |||||||||||||||    
T  33309736 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaattcact 33309682  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 495
Target Start/End: Complemental strand, 49745817 - 49745736
Alignment:
Q  414 aaatgaaatggaatgttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatattta 495  Q
    |||||||| ||||  |||||||||  ||||||||||||||||||||||| | | ||| ||||||||||||| ||||| ||||    
T  49745817 aaatgaaacggaaaattttgtgagaatgaaaacatcccgttttattttttaaatactaaaatcaaaattcattatattttta 49745736  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 31993673 - 31993629
Alignment:
Q  452 gttttatttttaagagactgaaatcaaaattcactatatatttat 496  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||    
T  31993673 gttttatttttaagagactacaatcaaaattcgctatatttttat 31993629  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 15998815 - 15998857
Alignment:
Q  167 gtctctaaaaatatagtaaatttggattttagtccctaaaaaa 209  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  15998815 gtctctaaaaatatagtaaattttgattttagtccctaaaaaa 15998857  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 14584945 - 14584987
Alignment:
Q  167 gtctctaaaaatatagtaaatttggattttagtccctaaaaaa 209  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  14584945 gtctctaaaaatataataaattttgattttagtccctaaaaaa 14584987  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 15998886 - 15998820
Alignment:
Q  429 ttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatattta 495  Q
    |||||||| | |||||||||| |||||||||||| || |||| ||||||||||| ||||||| ||||    
T  15998886 ttttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttactatattttta 15998820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 14585016 - 14584950
Alignment:
Q  429 ttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaattcactatatattta 495  Q
    |||||||| | |||||||||| |||||||||||| || |||| ||||||||||| | ||||| ||||    
T  14585016 ttttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttattatattttta 14584950  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 10840483 - 10840535
Alignment:
Q  429 ttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaatt 482  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  10840483 ttttgtgaggatgaaaacatcccgttttatttttaag-gactaaaatcaaaatt 10840535  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 17947286 - 17947339
Alignment:
Q  429 ttttgtgagggtgaaaacatcccgttttatttttaagagactgaaatcaaaatt 482  Q
    |||||||||| |||||||||| | |||||||||| || |||| |||||||||||    
T  17947286 ttttgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatt 17947339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 38851981 - 38852033
Alignment:
Q  157 taagttcttggtctctaaaaatatagtaaatttggattttagtccctaaaaaa 209  Q
    |||||| || ||||||||||||||| ||||||| ||||||| ||| |||||||    
T  38851981 taagtttttcgtctctaaaaatataataaattttgattttaatccttaaaaaa 38852033  T

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