View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16595_low_12 (Length: 277)

Name: NF16595_low_12
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16595_low_12
NF16595_low_12
[»] chr3 (4 HSPs)
chr3 (107-275)||(55474944-55475112)
chr3 (109-275)||(92009-92175)
chr3 (105-257)||(41886235-41886387)
chr3 (136-176)||(50305651-50305691)
[»] chr7 (2 HSPs)
chr7 (109-214)||(20901319-20901424)
chr7 (200-267)||(20901236-20901303)
[»] chr2 (4 HSPs)
chr2 (187-275)||(27277459-27277547)
chr2 (109-192)||(27278051-27278134)
chr2 (163-215)||(5142492-5142544)
chr2 (136-176)||(26021039-26021079)
[»] chr8 (1 HSPs)
chr8 (39-100)||(33616003-33616064)
[»] chr4 (4 HSPs)
chr4 (104-174)||(425992-426062)
chr4 (163-214)||(38709584-38709635)
chr4 (163-215)||(49708663-49708715)
chr4 (104-156)||(52720596-52720648)
[»] chr6 (1 HSPs)
chr6 (136-215)||(6841894-6841973)
[»] chr5 (3 HSPs)
chr5 (104-174)||(3135922-3135992)
chr5 (104-171)||(7087939-7088006)
chr5 (136-215)||(19854367-19854446)
[»] chr1 (3 HSPs)
chr1 (136-215)||(22862538-22862617)
chr1 (136-176)||(3789315-3789355)
chr1 (141-217)||(29152285-29152361)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 107 - 275
Target Start/End: Original strand, 55474944 - 55475112
Alignment:
Q  107 tggcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtcca 206  Q
    ||||||||||| |  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||    
T  55474944 tggcatttcacgtgagaaagtctaaaatttttctaccataggaaagtttatctttgccattagattaaataggaacatagattttattatgatatgtgca 55475043  T
Q  207 cactatatcatccaccactattctctctcctacactcaccaccacaaccgtattcctttccttcttctc 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55475044 cactatatcatccaccactattctctctcctacactcaccaccacaaccgtattcctttccttcatctc 55475112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 92009 - 92175
Alignment:
Q  109 gcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtccaca 208  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||| |||||||    
T  92009 gcatttcacatgggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaaatatgaacatagtttttactatggtaagtccaca 92108  T
Q  209 ctatatcatccaccactattctctctcctacactcaccaccacaaccgtattcctttccttcttctc 275  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  92109 ctatatcatccactaccattctctctcctacactcaccaccacaaccgtattcctttccttcatctc 92175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 41886387 - 41886235
Alignment:
Q  105 ggtggcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtc 204  Q
    |||||||||||| || | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41886387 ggtggcatttcatatggaaaagtctaaaatcttcctaccatagaaaagtttatctttgccattagattaaataggaacatagattttattatggtatgtc 41886288  T
Q  205 cacactatatcatccaccactattctctctcctacactcaccaccacaaccgt 257  Q
    || | |||||||| |||||||| |||||||||||||| |||||||||||||||    
T  41886287 catattatatcattcaccactactctctctcctacacgcaccaccacaaccgt 41886235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 50305651 - 50305691
Alignment:
Q  136 ttcctaccataggaaagtttatctttgccattagattaaat 176  Q
    ||||||||||||||||||| || || |||||||||||||||    
T  50305651 ttcctaccataggaaagttgattttagccattagattaaat 50305691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 20901424 - 20901319
Alignment:
Q  109 gcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtccaca 208  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||     
T  20901424 gcattttacatgggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttataatgggatgtccacg 20901325  T
Q  209 ctatat 214  Q
    ||||||    
T  20901324 ctatat 20901319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 20901303 - 20901236
Alignment:
Q  200 atgtccacactatatcatccaccactattctctctcctacactcaccaccacaaccgtattcctttcc 267  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  20901303 atgtccacactatatcatccaccatcattctctctcctacactcaccaccacaaccgtattcctttcc 20901236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 27277547 - 27277459
Alignment:
Q  187 attttattatggtatgtccacactatatcatccaccactattctctctcctacactcaccaccacaaccgtattcctttccttcttctc 275  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  27277547 attttactatggtaagtccacactatatcatccaccaccattctctctcctacactcaccatcacaaccgtattcctttccttcatctc 27277459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 27278134 - 27278051
Alignment:
Q  109 gcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaaatagaaacatagatttta 192  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||    
T  27278134 gcatttcacatgggaaagtctaaaaacttcctaccataggaaagtttatctttaccattagattaaatatgaacatagatttta 27278051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 5142544 - 5142492
Alignment:
Q  163 ccattagattaaatagaaacatagattttattatggtatgtccacactatatc 215  Q
    ||||||||||||| || ||||||||||||||||||||   |||||||||||||    
T  5142544 ccattagattaaagaggaacatagattttattatggtccatccacactatatc 5142492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 26021039 - 26021079
Alignment:
Q  136 ttcctaccataggaaagtttatctttgccattagattaaat 176  Q
    ||||||||||||||||||| || || |||||||||||||||    
T  26021039 ttcctaccataggaaagttgattttagccattagattaaat 26021079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 33616064 - 33616003
Alignment:
Q  39 atcatataatagtgataagttggcaagaggtaatagcttgtatattttctacatccaaaaaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33616064 atcatataatagtgataagttggcaagaggtaatggcttgtatattttctacatccaaaaaa 33616003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 426062 - 425992
Alignment:
Q  104 aggtggcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaa 174  Q
    ||||||||||| |||| ||||||| ||||| ||| | ||||| ||||||||||| ||||||||||||||||    
T  426062 aggtggcatttaacatgggaaagtttaaaaactttccaccatgggaaagtttatatttgccattagattaa 425992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 38709635 - 38709584
Alignment:
Q  163 ccattagattaaatagaaacatagattttattatggtatgtccacactatat 214  Q
    ||||||||||||| ||||||||||||||||| |||||   ||||||||||||    
T  38709635 ccattagattaaagagaaacatagattttatgatggtcaatccacactatat 38709584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 49708715 - 49708663
Alignment:
Q  163 ccattagattaaatagaaacatagattttattatggtatgtccacactatatc 215  Q
    ||||||||||||| || |||||||||||||||||| |   |||||||||||||    
T  49708715 ccattagattaaagaggaacatagattttattatgatccatccacactatatc 49708663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 52720596 - 52720648
Alignment:
Q  104 aggtggcatttcacataggaaagtctaaaatcttcctaccataggaaagttta 156  Q
    |||||||||||||||| |||| || |||||  |||| ||||||||||||||||    
T  52720596 aggtggcatttcacatgggaaggtataaaacattcccaccataggaaagttta 52720648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 6841973 - 6841894
Alignment:
Q  136 ttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtccacactatatc 215  Q
    |||| ||||||||||||| |||  | |||||||||||||| || |||||| |||||||||||||   |||||||||||||    
T  6841973 ttcccaccataggaaagtatattatggccattagattaaagagtaacatatattttattatggtccatccacactatatc 6841894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 3135922 - 3135992
Alignment:
Q  104 aggtggcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagattaa 174  Q
    |||||||||||||||| |||| || ||||| ||||| ||||| ||||||||||| || |||| ||||||||    
T  3135922 aggtggcatttcacatgggaaggtataaaaccttcccaccatgggaaagtttattttagccactagattaa 3135992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 7088006 - 7087939
Alignment:
Q  104 aggtggcatttcacataggaaagtctaaaatcttcctaccataggaaagtttatctttgccattagat 171  Q
    |||||||||||||||| ||||||  ||||||||||| | ||||||||| ||| | ||| |||||||||    
T  7088006 aggtggcatttcacatgggaaaggttaaaatcttcccatcataggaaactttttttttaccattagat 7087939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 19854367 - 19854446
Alignment:
Q  136 ttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtccacactatatc 215  Q
    |||| ||||||||||||| |||  | |||||||||||||| || |||||  |||||||||||||   |||||||||||||    
T  19854367 ttcccaccataggaaagtatattatggccattagattaaagagtaacatgtattttattatggtccatccacactatatc 19854446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 22862617 - 22862538
Alignment:
Q  136 ttcctaccataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtccacactatatc 215  Q
    |||| ||||||||||||| |||  | |||||||||||||| || |||||  |||||||||||||   |||||||||||||    
T  22862617 ttcccaccataggaaagtatattatggccattagattaaagagtaacatttattttattatggtccatccacactatatc 22862538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 3789355 - 3789315
Alignment:
Q  136 ttcctaccataggaaagtttatctttgccattagattaaat 176  Q
    ||||||||||||||||||| || || |||||||||||||||    
T  3789355 ttcctaccataggaaagttgattttagccattagattaaat 3789315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 29152361 - 29152285
Alignment:
Q  141 accataggaaagtttatctttgccattagattaaatagaaacatagattttattatggtatgtccacactatatcat 217  Q
    ||||||||||||||| |  |  ||||| |||||||||| |  ||||||||||| ||||| ||||||||||| |||||    
T  29152361 accataggaaagttttttatgaccattggattaaataggattatagattttatgatggtttgtccacactacatcat 29152285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University