View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16595_low_13 (Length: 265)
Name: NF16595_low_13
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16595_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 36962652 - 36962901
Alignment:
| Q |
6 |
acggcgacagcgacaaaccttcatcctcaccgttctcatctctctcgtccctgttgtcatctctctctccactcgccgtcgaattcct-ttcctctccag |
104 |
Q |
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| T |
36962652 |
acggcgacagcgacaaaccttcgtcctcaccgttctcatctctctcgtccctgttgtcatctctctctccactcgccgtcgaattcctcttcctctccag |
36962751 |
T |
|
| Q |
105 |
tctctataattttagatcggtgacggcgacgtcgctggaaatgctaatctgagccaccgactacggtagtggctgactaagagaaggatgagaacgatgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36962752 |
tctctataattttagatcggtgacggcgacgtcgttggaaacgctaatctgagccaccgactacggtagtggctgactaagagaaggatgagaacgatgg |
36962851 |
T |
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| Q |
205 |
tggaagtggtggtcggtgatgggggaggatgatggtggtggtaattgatg |
254 |
Q |
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| T |
36962852 |
tggaagtggtggtcggtgatgggggaggatgatggtggtggtaattgatg |
36962901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 16768280 - 16768032
Alignment:
| Q |
6 |
acggcgacagcgacaaaccttcatcctcaccgttctcatctctctcgtccctgttgtcatctctctctccactcgccgtcgaattcct-ttcctctccag |
104 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
16768280 |
acggcgacagcgacaaaacttcgtcctcaccgttctcatctctttcgtccctgttgtcatctctctctccactcgccgtcgaattcctcttcctctcctg |
16768181 |
T |
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| Q |
105 |
tctctataattttagatcggtgacggcgacgtcgctggaaatgctaatctgagccaccgactacggtagtggctgactaagagaaggatgagaacgatgg |
204 |
Q |
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| T |
16768180 |
tctctataattttagatcggtgacggcgacgtcgccggaaacgctagtctgaaccaccgactacggtagtggctgactaagagaaggatgagaacgatgg |
16768081 |
T |
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| Q |
205 |
tggaagtggtggtcggtgatgggggaggatgatggtggtggtaattgatg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16768080 |
tggaagtggtggtcggtgatgggggaggatgatggt-gtggtaattgatg |
16768032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 37507947 - 37508196
Alignment:
| Q |
10 |
cgacagcgacaaaccttcatcctcaccgttctcatctctctcgtccctgttgtcat----ctctctctccactcgccgtcgaattcct-ttcctctccag |
104 |
Q |
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|||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
37507947 |
cgacggcgacaaacgttcgtcctcaccgttctcatctctctcgtccctgttgtcatatctctctctctccactcgccgttgaattcctcttcctctccag |
37508046 |
T |
|
| Q |
105 |
tctctataattttagatcggtgacggcgacgtcgctggaaatgctaatctgagccaccgactacggtagtggctgactaagagaaggatgagaacgatgg |
204 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
37508047 |
tctctataattttagatcggtgacggcaacgtcgccggaaacgctaatctaagccaccgactacggtagtggctgactaggagaaggatgagaacaatgg |
37508146 |
T |
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| Q |
205 |
tggaagtggtggtcggtgatgggggaggatgatggtggtggtaattgatg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37508147 |
tggaagtggtggtcggtgatgggggaggatgatggtggtggtaattgatg |
37508196 |
T |
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