View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16595_low_14 (Length: 251)
Name: NF16595_low_14
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16595_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6344571 - 6344803
Alignment:
| Q |
1 |
agttatttaagatgccatttgataaaaacgttaaatatataaatcgttttcattttaaattcattggagagtgactcttttgaaaagcaaaaacaaagcg |
100 |
Q |
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| T |
6344571 |
agttatttaagatgccatttgataaaaacgttaaatata--aatcattttcattttaaattcattggagagtgactcttttgaaaagcaaaaacaaagcg |
6344668 |
T |
|
| Q |
101 |
ttgaaaaataactttgcaacatcttgccgggcactgacccaatttatactttgtgggacacatgacgaattaaacgtataatacgaatatttatttattt |
200 |
Q |
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| T |
6344669 |
ttgaaaaataactttgcaacatcttgccgggcactgacccaatttatactttgtgggacacatgacgaattaaacgtttaatacgaatatttatttattt |
6344768 |
T |
|
| Q |
201 |
aatatttatgtttcaagtataaaacgggttctaca |
235 |
Q |
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| T |
6344769 |
aatatttatgtttcaagtataaaacgggttctaca |
6344803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6328494 - 6328731
Alignment:
| Q |
1 |
agttatttaagatgccatttgataaaaacgttaaatatataaatcgttttcattttaaattcattggagagtgactcttttgaaaagcaaaaacaaagcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6328494 |
agttatttaagatgccatttgataaaaacgttaaataaataaatcgttttgattttgaattcattggagagtgactcttttgaaaagcaaaa-caaagca |
6328592 |
T |
|
| Q |
101 |
ttgaaaaataactttgcaacatcttgccgggcactgac----ccaatttatactttgtgggacacatgacgaattaaacgtataatacgaatatttattt |
196 |
Q |
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|||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6328593 |
ttgaaaaataactttgcaacatcttgccggacactgactgaccaaatttatactttgtgggacacatgacgaattaaacgtttaatacgaatatttattt |
6328692 |
T |
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| Q |
197 |
atttaatatttatgtttcaagtataaaacgggttctaca |
235 |
Q |
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| T |
6328693 |
atttaatatttatgtttcaagtataaaacgggttctaca |
6328731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 6221763 - 6221716
Alignment:
| Q |
166 |
cgaattaaacgtataatacgaatat-ttatttatttaatatttatgtt |
212 |
Q |
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| T |
6221763 |
cgaattaaacgtttaatacgaatatattatttatttaatatttatgtt |
6221716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 6221815 - 6221777
Alignment:
| Q |
75 |
ctcttttgaaaagcaaaaacaaagcgttgaaaaataact |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
6221815 |
ctcttttgaaaagcaaaaacaaagcgttgaaaaaaaact |
6221777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6221871 - 6221838
Alignment:
| Q |
1 |
agttatttaagatgccatttgataaaaacgttaa |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6221871 |
agttatttaagatgccatttgataaaaacgttaa |
6221838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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