View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16595_low_4 (Length: 535)
Name: NF16595_low_4
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16595_low_4 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 178 - 504
Target Start/End: Original strand, 48658393 - 48658720
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48658393 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg |
48658492 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48658493 |
catcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatacacaagccttt |
48658592 |
T |
|
| Q |
378 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaacaaattggt-atcagagcatttttcttacgggatttgtg |
476 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
48658593 |
tgcatcatatttgctctttgttcattcttgttataaccactatatttcatcaaataaccaacaaattggtaatcagagcatttttcttacgggatctgtg |
48658692 |
T |
|
| Q |
477 |
agatgaatgctgaaacaggtttttcaca |
504 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
48658693 |
agatgaatgctgaaacaagtttttcaca |
48658720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 178 - 440
Target Start/End: Original strand, 48659524 - 48659786
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48659524 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg |
48659623 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659624 |
catcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
48659723 |
T |
|
| Q |
378 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaaca |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659724 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaaca |
48659786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 177 - 504
Target Start/End: Original strand, 9306115 - 9306443
Alignment:
| Q |
177 |
ctgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttag |
276 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9306115 |
ctgtttaatgaatgacccttgaagcttttcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttag |
9306214 |
T |
|
| Q |
277 |
gcatcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagcctt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
9306215 |
gcatcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctactaaataaaaaacaagcctt |
9306314 |
T |
|
| Q |
377 |
ttgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaacaaattggt-atcagagcatttttcttacgggatttgt |
475 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
9306315 |
ttgcatcatatatactctttgttcattcttgttataaccactatatttcatcaaataaccaacaaattggtaatcagagcatttttcttacgggatctgt |
9306414 |
T |
|
| Q |
476 |
gagatgaatgctgaaacaggtttttcaca |
504 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
9306415 |
gagatgaatgctgaaacaagtttttcaca |
9306443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 178 - 436
Target Start/End: Original strand, 9310277 - 9310535
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9310277 |
tgtttaatgaatgacccttgaagcttctcaatcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg |
9310376 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9310377 |
catcagttatgttaattagtggcaacgtatatgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataaaatacaagccttt |
9310476 |
T |
|
| Q |
378 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataacc |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9310477 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataacc |
9310535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 178 - 441
Target Start/End: Original strand, 31085054 - 31085317
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31085054 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg |
31085153 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31085154 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
31085253 |
T |
|
| Q |
378 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaacaa |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31085254 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaacaa |
31085317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 178 - 440
Target Start/End: Original strand, 31595313 - 31595575
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
31595313 |
tgtttaatgaatgatccttgacgtttctcagtcagttttaattctcctaaattctaggcaataaagattaagtgactgatttgatttctttttatttagg |
31595412 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
31595413 |
catcagttatgctaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataaaatacaagtattt |
31595512 |
T |
|
| Q |
378 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaaca |
440 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31595513 |
tgcatcatattttatctttgttcattcttgttataaccactatatttcatcaaataaccaaca |
31595575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 289 - 504
Target Start/End: Original strand, 31081006 - 31081222
Alignment:
| Q |
289 |
ttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttttgcatcatatt |
388 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31081006 |
ttaattagtggcaatgtatctgcctttctactttccttatgattgtataagtacaccagtctttcctgctaaataatatacaagccttttgcatcatatt |
31081105 |
T |
|
| Q |
389 |
ttctctttgttcattcttgttataaccactatatttcatcaaataaccaacaaattggt-atcagagcatttttcttacgggatttgtgagatgaatgct |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31081106 |
ttctctttgttcattcttgttataaccactatatttcatcaaataaccaacaaattggtaatcagagcatttttcttacgggatctgtgagatgaatgct |
31081205 |
T |
|
| Q |
488 |
gaaacaggtttttcaca |
504 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
31081206 |
gaaacaagtttttcaca |
31081222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 178 - 440
Target Start/End: Complemental strand, 50966840 - 50966578
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50966840 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggctgatttgatttccttttatttagg |
50966741 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50966740 |
catcagttatgttaattagtggcaacgtatttgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
50966641 |
T |
|
| Q |
378 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaaca |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50966640 |
tgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaaca |
50966578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 178 - 440
Target Start/End: Original strand, 10134412 - 10134675
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
10134412 |
tgtttaatgaatgacccttgaagcttttcagtcagttttaattctcctaaattccaggcaataaagaataagtggctgatttgttttccttttatttagg |
10134511 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10134512 |
catcagctatgttaattagtggcaatgtatttgcctttctactttccttagggctgtataagtacaccagtctttcctgctaaataatatacaagccttt |
10134611 |
T |
|
| Q |
378 |
tgca-tcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaaca |
440 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10134612 |
tgcattcatattttctctttgttcattcttgttataaccactgtatttcatcaaataaccaaca |
10134675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 36019056 - 36018893
Alignment:
| Q |
16 |
tgaaggacaaggtgaaccggaaccttttgaagcatcaaaacgccgacatcacaaaaaactagttatgaaagacaatccttaaagtagcatcatgatagaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36019056 |
tgaaggacaaggtgaaccggaaccttttgaagcatcaaaacgccgacatcacaaaaaactaggtatgaaagacaatccttaaagtagcatcatgatagaa |
36018957 |
T |
|
| Q |
116 |
gtatgctgcatgctgatcttctgccttattcgaagaaggaaaacattgaatgctgaggggtctg |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018956 |
gtatgctgcatgctgatcttctgccttattcgaagaaggaaaacattgaatgctgaggggtctg |
36018893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 178 - 408
Target Start/End: Complemental strand, 20052035 - 20051807
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20052035 |
tgtttaatgaatgacccatgaagctgcacagtcagttatgattctcctaaattataggcaataaagattaagtggctgatttgatttccttttatttagg |
20051936 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatggttgtataagtacaccagtctttcctgctaaataatatacaagccttt |
377 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||||||||||| ||||||| |||||||||| | |||| ||||||||||||||||| ||| |||||| |
|
|
| T |
20051935 |
catcagttatgtcaattagtagcaacgtttctgcctttctacttttcttatggctgtataagtaga-cagtatttcctgctaaataatacacaggccttt |
20051837 |
T |
|
| Q |
378 |
tgca-tcatattttctctttgttcattcttgt |
408 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |
|
|
| T |
20051836 |
tgcattcatattt--tctttgttcattcttgt |
20051807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 178 - 330
Target Start/End: Complemental strand, 154734 - 154587
Alignment:
| Q |
178 |
tgtttaatgaatgacccttgaagcttctcagtcagttttaattctcctaaattctaggcaataaagattaagtggttgatttgatttccttttatttagg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
154734 |
tgtttaatgaatgacccttgaagcttctcagtcggttttaattctcctaaaatctaggcaataaagattaattgattgatttgattttcttttatttagg |
154635 |
T |
|
| Q |
278 |
catcagttatgttaattagtggcaacgtatctgcctttctactttccttatgg |
330 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
154634 |
ca-----tatgttaattagtggcaacgtatttgcctctctactttccttatgg |
154587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 356 - 504
Target Start/End: Complemental strand, 154587 - 154438
Alignment:
| Q |
356 |
gctaaataatatacaagccttttgcatcatattttctctttgttcattcttgttataaccactatatttcatcaaataaccaacaaattggt-atcagag |
454 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| || |
|
|
| T |
154587 |
gctaaataacatacaagccttttgcatcctattttctctttgttcatttttgttataaccattatatttcatcaaataaccaacaaattggtaatcatag |
154488 |
T |
|
| Q |
455 |
catttttcttacgggatttgtgagatgaatgctgaaacaggtttttcaca |
504 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||| | |||||||||| |
|
|
| T |
154487 |
catttttcttaagggatctgtgacatgaatgctgaaataagtttttcaca |
154438 |
T |
|
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