View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16595_low_7 (Length: 368)

Name: NF16595_low_7
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16595_low_7
NF16595_low_7
[»] chr3 (2 HSPs)
chr3 (1-259)||(20528928-20529186)
chr3 (257-350)||(20529265-20529358)
[»] scaffold0022 (1 HSPs)
scaffold0022 (5-78)||(60684-60757)
[»] chr4 (1 HSPs)
chr4 (17-174)||(55713215-55713372)
[»] chr1 (2 HSPs)
chr1 (43-75)||(16181404-16181436)
chr1 (17-66)||(25587004-25587053)
[»] chr7 (1 HSPs)
chr7 (36-118)||(1506945-1507027)
[»] chr6 (1 HSPs)
chr6 (9-63)||(32152947-32153001)
[»] scaffold0807 (1 HSPs)
scaffold0807 (37-66)||(4949-4978)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 20528928 - 20529186
Alignment:
Q  1 tctccaaaaatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtgtaaagtttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20528928 tctccaaaaatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtgtaaagtttcc 20529027  T
Q  101 tccttatggtgaaaaatatgatgattgcacttttttcaaattatccataccgtagaaatccaaacaatattcaacagcatacgacacctattcgcaaaac 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20529028 tccttatggtgaaaaatatgatgattgcgcttttttcaaattatccataccgtagaaatccaaacaatattcaacagcatatgacacctattcgcaaaac 20529127  T
Q  201 cacctaaagcaccaaattgcatctgaggctcatcaaatagatgtgtcccactaatacca 259  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20529128 cacccaaagcaccaaattgcatctgaggctcatcaaataaatgtgtcccactaatacca 20529186  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 20529265 - 20529358
Alignment:
Q  257 ccataccacatcctcgttgttattaaggactctcctccaaagcaagtaatctttaaccgcatccgattaagaagcagacgttaaacaaacaaag 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  20529265 ccataccgcatcctcgttgttattaaggactctcctccaaagcaagttatctttaatcgcatccgattaagaagcagacgttaaacaaacaaag 20529358  T

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Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 60757 - 60684
Alignment:
Q  5 caaaaatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctc 78  Q
    ||||| ||||| ||||||| | ||||| | |||||||||||||||||||||||| |||||||||| ||||||||    
T  60757 caaaactggtactcaaaattaaaagtagcttattttgatttcaaccaccaataaatttgaagcttgatcttctc 60684  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 55713372 - 55713215
Alignment:
Q  17 tcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtgtaaagtttcctccttatggtgaaaaa 116  Q
    ||||||||| | ||| | |||||| |||||| |||||||||||  || |||||||||||||||||||| |  || ||  |||| |||||||| |||||||    
T  55713372 tcaaaatcaaatgtaacgtattttaatttcagccaccaataagactgcagcttaatcttctcgcataaagtttgcaagttttcgtccttatgttgaaaaa 55713273  T
Q  117 tatgatgattgcacttttttcaaattatccataccgtagaaatccaaacaatattcaa 174  Q
    |||||| | ||   |  || ||||||||||| |||||||||| ||| | |||||||||    
T  55713272 tatgatcactgtgttcattacaaattatccaaaccgtagaaagccagataatattcaa 55713215  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 16181404 - 16181436
Alignment:
Q  43 tttcaaccaccaataagtttgaagcttaatctt 75  Q
    |||||||||||||||||||||||||||||||||    
T  16181404 tttcaaccaccaataagtttgaagcttaatctt 16181436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 25587004 - 25587053
Alignment:
Q  17 tcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaag 66  Q
    ||||||||| ||||| ||| |||||||||||||||||||||  |||||||    
T  25587004 tcaaaatcaaaagtagcatgttttgatttcaaccaccaatatatttgaag 25587053  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 1506945 - 1507027
Alignment:
Q  36 attttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtgtaaagtttcctccttatggtgaaaaata 118  Q
    |||||||||||||  |||||||||  ||||||||||| |||||  |||| |  |||||| ||||||||||||  |||||||||    
T  1506945 attttgatttcaattaccaataagactgaagcttaattttctcatataaagtttgtaaattttcctccttattctgaaaaata 1507027  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 32152947 - 32153001
Alignment:
Q  9 aatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttg 63  Q
    |||||||||||||| || ||||| | ||||||| |||||||||| ||||||||||    
T  32152947 aatggtattcaaaaacaaaagtagcgtattttgctttcaaccacaaataagtttg 32153001  T

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Target: scaffold0807 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 4949 - 4978
Alignment:
Q  37 ttttgatttcaaccaccaataagtttgaag 66  Q
    ||||||||||||||||||||||||||||||    
T  4949 ttttgatttcaaccaccaataagtttgaag 4978  T

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