View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16595_low_9 (Length: 312)
Name: NF16595_low_9
Description: NF16595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16595_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 30382089 - 30382255
Alignment:
| Q |
1 |
cctgaaccctaccctgaagagaatttggacttcttaaaggaacagaatattcgtctttttcaatttggaattgagggcaaaacggtatatatatttttta |
100 |
Q |
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| T |
30382089 |
cctgaaccctaccctgaagagaatttggacttcttaaaggaacagaatattcgtctttttcaatttggaattgagggcaaaacggtatatatatttttta |
30382188 |
T |
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| Q |
101 |
tattcatatcgtcacatttgctatttgaatgttgtttaaggcttgtgattaattgaaatagggttaa |
167 |
Q |
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| T |
30382189 |
tattcatatcgtcacatatgctatttgaatgttatttaaggcttgtgattaattgaaataggattaa |
30382255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 30382283 - 30382415
Alignment:
| Q |
163 |
gttaatatatcagtcttttacttttaattttggtaaaaaattgtttgtttggagtccttgaaagtatataccactttattcttttggtgattagacattt |
262 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30382283 |
gttaacatatcagttttttacttttaattttggtaaaaaattgtttgtttggagtccttgaaagtatataccactttattcttttggtgattagactttt |
30382382 |
T |
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| Q |
263 |
taaggaaaatttcattgagatgtatattaacta |
295 |
Q |
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| T |
30382383 |
taagaaaaatttcattgagatgtatattaacta |
30382415 |
T |
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