View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16596_high_15 (Length: 357)
Name: NF16596_high_15
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 113 - 348
Target Start/End: Complemental strand, 18348341 - 18348106
Alignment:
| Q |
113 |
tggaagtttcaacacattgaactttcaatatcacatcatgtcaacacccgtaatgaatcttcttaactctcccattcttggtataaaagtatcattgcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18348341 |
tggaagtttcaacacattgaactttcaatatcacatcatgtcaacacccgtaatgaatcttcttaactctcccattcttggtataaaactatcattgcat |
18348242 |
T |
|
| Q |
213 |
tccttcacacccaaaaacaaagctatcaacaacacccacaattacaatcacaatcacaagtctcatattatgatgcacaaacgtgttaactcagacaaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348241 |
tccttcacacccaaaaacaaagctatcaacaacacccacaatcacaatcacaatcacaagtctcatattatgatgcacaaacgtgttaactcagacaaac |
18348142 |
T |
|
| Q |
313 |
tcagcagcaccatggagtctctcctccctgatgatg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348141 |
tcagcagcaccatggagtctctcctccctgatgatg |
18348106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 18348478 - 18348358
Alignment:
| Q |
25 |
ggtctaaaactacaatgaaaccatttatttattaatatatcatagtctgaaaaatcaaaatatttacttctttcaacgaaatattcattgg-----aagt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18348478 |
ggtctaaaactacaatgaaaccatttatttattaatatatcatagtctgaaaaatcaaaatatttacttctttcaacgaaatattcattggtataaaagt |
18348379 |
T |
|
| Q |
120 |
ttcaacacattgaactttcaa |
140 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18348378 |
ttcaacacattgaactttcaa |
18348358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University