View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_high_2 (Length: 558)
Name: NF16596_high_2
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 279112 - 279544
Alignment:
| Q |
17 |
tcttgtaatagaaattgttttggactagacaaaagtctagcctgccataaattagggctcgtttttacataggttcaagtgagtggaatcccc-ttctca |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
279112 |
tcttgtaatagaaattgttttggactaggcaaaagtctagcctgcaacaaattaaggctcgtttttacataggtccaagtgagtggaatcccccttctca |
279211 |
T |
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| Q |
116 |
ccttggattatctccatctcaatgaagcctcgtaatgtcatgtggctcataacggc-atcgtctactgcatttatggccaccattccataacggctgcct |
214 |
Q |
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| T |
279212 |
ccttggatcctctctatctcaatgaagcctagtaatgtcatgtggctcataacggccatcatttaccgcatttatggccaccattccataacggttgcct |
279311 |
T |
|
| Q |
215 |
cttatccgaccattaattactacataaccgtctcctcaaccctatataaatagtcaaatcacaagtaggttaaaatacatgtagctttgaatcaataaca |
314 |
Q |
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| T |
279312 |
cttatccgaccattaattactacataaccgtctcctcgaccatatataaatagtcaaatcacaagtaggttaaaatacatgtagctttgaatcaacaaca |
279411 |
T |
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| Q |
315 |
aagtgaagtacgaacaaagaacaaataatgcgctttcacatactttgattgatatatgatttgaaaatgaaatatcctctctatgagagttggaattttg |
414 |
Q |
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| T |
279412 |
gagtgaagtacgaacaaagaacaaataatgcgttttcatatactttgattgatatatgatttgaaaatgaaatatcctctctatgagagttggaattttg |
279511 |
T |
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| Q |
415 |
gaaattattgcgtcaagttagacacaaactcat |
447 |
Q |
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| T |
279512 |
gaaattattgtgtcaagttagacacaaactcat |
279544 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 37481720 - 37481656
Alignment:
| Q |
93 |
aagtgagtggaatccccttctcaccttggattatctccatctcaatgaagcctcgtaatgtcatg |
157 |
Q |
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| T |
37481720 |
aagtgagtagaatatccttctcacctcggattctctccgcctcaatgaagcctcatattgtcatg |
37481656 |
T |
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