View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16596_high_6 (Length: 458)

Name: NF16596_high_6
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16596_high_6
NF16596_high_6
[»] chr8 (9 HSPs)
chr8 (1-445)||(5198424-5198864)
chr8 (254-445)||(5195222-5195413)
chr8 (21-239)||(5177972-5178186)
chr8 (298-445)||(5177786-5177931)
chr8 (315-397)||(33861483-33861565)
chr8 (359-445)||(6231738-6231830)
chr8 (359-436)||(1795686-1795769)
chr8 (209-295)||(5207377-5207463)
chr8 (359-414)||(5185265-5185320)
[»] chr2 (8 HSPs)
chr2 (304-397)||(35611435-35611528)
chr2 (304-397)||(27194264-27194357)
chr2 (304-397)||(27844078-27844171)
chr2 (304-397)||(39441417-39441509)
chr2 (208-254)||(35611522-35611568)
chr2 (209-254)||(27194351-27194395)
chr2 (209-254)||(27844165-27844209)
chr2 (209-254)||(39441378-39441423)
[»] chr6 (3 HSPs)
chr6 (304-393)||(16015370-16015459)
chr6 (209-254)||(16015331-16015376)
chr6 (209-254)||(18344638-18344682)
[»] scaffold0356 (2 HSPs)
scaffold0356 (315-398)||(15393-15476)
scaffold0356 (209-254)||(15343-15388)
[»] chr4 (2 HSPs)
chr4 (315-397)||(31921507-31921589)
chr4 (209-254)||(617886-617930)
[»] chr3 (1 HSPs)
chr3 (315-397)||(41763465-41763547)
[»] chr1 (3 HSPs)
chr1 (315-395)||(2330961-2331041)
chr1 (209-254)||(2331046-2331091)
chr1 (209-254)||(48233891-48233935)
[»] chr5 (2 HSPs)
chr5 (304-397)||(14191144-14191240)
chr5 (208-254)||(14191104-14191150)
[»] chr7 (2 HSPs)
chr7 (359-445)||(5178920-5179012)
chr7 (261-311)||(5179026-5179077)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 5198424 - 5198864
Alignment:
Q  1 gaaaggaaacttttgtgactagttcatatgaaaatagataaccctcgcatacttgttcctatttgcaaatatttcacgagaaaaataaaatacacatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5198424 gaaaggaaacttttgtgactagttcatatgaaaatagataaccctcgcatacttgttcctatttgtaaatatttcacgagaaaaataaaatacacatatt 5198523  T
Q  101 gattgagttattatattcatnnnnnnnnttccaagtaactcaacggctaacttcctaatttgaaattaatcaataaagattgcagaacatgatgtgtgca 200  Q
    ||||||||||||||||||||        ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198524 gattgagttattatattcataaaaaaaattcc-------tcaacggctaacttcctaatttgaaattaatcaataaagattgcagaacatgatgtgtgca 5198616  T
Q  201 ttgcagctaggccagaacatgttgtaattgtcattgatggtaattagaacaaatttagagtactaactctatgatactgttcagcattttccataat--- 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||       
T  5198617 ttgcagctaggccagaacatgttgtaattgtcattgatggtaattagaacaaatttagagtactaactgtatcatactgttcaacagtttccataatgta 5198716  T
Q  298 tatcaaaacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5198717 tatcaaaacaaatggcatgtcattatgcaacaataaaaggaagagttgcacttaaaatgcatttagaggtaaaatcaaacttcaaagtaaaaacatgtct 5198816  T
Q  398 atgagttgatgacagcaacattaaaattctaacataaagttaattttt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198817 atgagttgatgacagcaacattaaaattctaacataaagttaattttt 5198864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 254 - 445
Target Start/End: Complemental strand, 5195413 - 5195222
Alignment:
Q  254 tttagagtactaactctatgatactgttcagcattttccataattatcaaaacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaa 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5195413 tttagagtactaactctatgatactgttcagcattttccataattatgaaaacaaatggcatgtcattatgcaacaataaaaggaagagctgcacttaaa 5195314  T
Q  354 atgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtctatgagttgatgacagcaacattaaaattctaacataaagttaattttt 445  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5195313 atgtattaagaggtaaaatcaaacttcaacgtaaaaacatgtctatgagttgatgacagcaacattaaaattctaacataaagttaattttt 5195222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 5178186 - 5177972
Alignment:
Q  21 agttcatatgaaaatagataaccctcgcatacttgttcctatttgcaaatatttcacgagaaaaataaaatacacatattgattgagttattatattcat 120  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  5178186 agttcatatgaaaatagatagccctcacatacttgttccaatttgtaaatgtttcacgagaaaaataaaatacacat--tgattgagctgttatattcat 5178089  T
Q  121 nnnnnnnnttccaagtaactcaacggctaacttcctaatttgaaattaatcaataaagattgcagaacatgatgtgtgcattgcagctaggccagaacat 220  Q
            ||| |||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||  ||||||    
T  5178088 caaaaaatttcaaagtaactcatcggctaacctcctaattcgaaattaatcaagaaagattgcagaacatgatgtgtacattgcaactaggc--gaacat 5177991  T
Q  221 gttgtaattgtcattgatg 239  Q
    ||||||||| |||||||||    
T  5177990 gttgtaattttcattgatg 5177972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 298 - 445
Target Start/End: Complemental strand, 5177931 - 5177786
Alignment:
Q  298 tatcaaaacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    |||||||||||||||  |||||||  | ||||  |||||||| | | ||||||||||||||| |||||||||  |||||||||||| |||||||| ||||    
T  5177931 tatcaaaacaaatggtgtgtcattcagaaacataaaaaggaacagcagcacttaaaatgcatcaagaggtaa--tcaaacttcaaaataaaaacacgtct 5177834  T
Q  398 atgagttgatgacagcaacattaaaattctaacataaagttaattttt 445  Q
    ||||| | ||||||||||||||||||||||||||||||  ||||||||    
T  5177833 atgagattatgacagcaacattaaaattctaacataaaactaattttt 5177786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 33861483 - 33861565
Alignment:
Q  315 tgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    ||||||||||||||  ||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  33861483 tgtcattatgcaactttaaaaggaaaagctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 33861565  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 6231830 - 6231738
Alignment:
Q  359 ttaagaggtaaaatcaaacttcaaagtaaaaacatgtctatgagttgatga------cagcaacattaaaattctaacataaagttaattttt 445  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||      ||||||||||||||||||||||||||| ||||||||    
T  6231830 ttaagaggtaatatcaaacttcaaagtaaaaacatgtctatgagtttatgacagcgtcagcaacattaaaattctaacataaagctaattttt 6231738  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 436
Target Start/End: Original strand, 1795686 - 1795769
Alignment:
Q  359 ttaagaggtaaaatcaaacttcaaagtaaaaacatgtctatgagttgat------gacagcaacattaaaattctaacataaag 436  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| ||      | |||||||||||||||||||||||||||    
T  1795686 ttaagaggtaacatcaaacttcaaagaaaaaacatgtctatgagtttatggcagcgtcagcaacattaaaattctaacataaag 1795769  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 5207463 - 5207377
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaatttagagtactaactctatgatactgttcagcattttccata 295  Q
    ||||||||||||| |||||||||||| ||||| || |||| |||| | || |||| |||||||||||||||||||| ||||| ||||    
T  5207463 aggccagaacatgctgtaattgtcatcgatgggaaatagagcaaaatgagggtacgaactctatgatactgttcagaatttttcata 5207377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 5185320 - 5185265
Alignment:
Q  359 ttaagaggtaaaatcaaacttcaaagtaaaaacatgtctatgagttgatgacagca 414  Q
    ||||||||||| |||||||||  |||||||||||||||  |||||| |||||||||    
T  5185320 ttaagaggtaacatcaaactttgaagtaaaaacatgtcactgagtttatgacagca 5185265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 35611528 - 35611435
Alignment:
Q  304 aacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    |||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  35611528 aacaaatggcgtgtcattatgcaactttaaaaggaaaaactgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 35611435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 27194357 - 27194264
Alignment:
Q  304 aacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    |||||||||  ||||||||||||||  | ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  27194357 aacaaatggtgtgtcattatgcaactttgaaaggaaaagctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 27194264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 27844171 - 27844078
Alignment:
Q  304 aacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    |||||||||  ||||||||||||||  | ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  27844171 aacaaatggtgtgtcattatgcaactttgaaaggaaaagctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 27844078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 39441417 - 39441509
Alignment:
Q  304 aacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    |||||||||| ||||||||||||||  ||||||||| | ||||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  39441417 aacaaatggcgtgtcattatgcaactttaaaaggaaaagctgcacttaaa-tgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 39441509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 35611568 - 35611522
Alignment:
Q  208 taggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||    
T  35611568 taggccataacatgttgtaattgtcattgatgagaattagaacaaat 35611522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 27194395 - 27194351
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  27194395 aggccagaacatgttgtaattgtcattgatag-aattagaacaaat 27194351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 27844209 - 27844165
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  27844209 aggccagaacatgttgtaattgtcattgatag-aattagaacaaat 27844165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 39441378 - 39441423
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||| |||||| |||||||||||||||||  |||||||||||||    
T  39441378 aggccataacatgctgtaattgtcattgatgagaattagaacaaat 39441423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 16015370 - 16015459
Alignment:
Q  304 aacaaatggcatgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacat 393  Q
    |||||||||| ||||||||||||||  ||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  16015370 aacaaatggcgtgtcattatgcaactttaaaaggaaaagctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacat 16015459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 16015331 - 16015376
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||    
T  16015331 aggctagaacatgttgtaattgtcattgatgagaattagaacaaat 16015376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 18344682 - 18344638
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||    
T  18344682 aggccaaaacatgttgtaattgtcattgatag-aattagaacaaat 18344638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 398
Target Start/End: Original strand, 15393 - 15476
Alignment:
Q  315 tgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtcta 398  Q
    ||||||||||||||  ||||||||| | ||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  15393 tgtcattatgcaactttaaaaggaaaagctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtcta 15476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 15343 - 15388
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||| ||||||||||||||||||| |||| ||||||||||||||    
T  15343 aggccataacatgttgtaattgtcatcgatgataattagaacaaat 15388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 31921589 - 31921507
Alignment:
Q  315 tgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    ||||||||||||||  ||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  31921589 tgtcattatgcaactttaaaaggaaaagctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 31921507  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 617886 - 617930
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  617886 aggccagaacatgttgtaattgtcattgatag-aattagaacaaat 617930  T

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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 41763465 - 41763547
Alignment:
Q  315 tgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    ||||||||||||||  ||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41763465 tgtcattatgcaactttaaaaggaaaagctgcacttaaaatgcattaagaggtaacataaaacttcaaagtaaaaacatgtct 41763547  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 2331041 - 2330961
Alignment:
Q  315 tgtcattatgcaacaataaaaggaagaactgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgt 395  Q
    ||||||||||||||  ||||||||| | |||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  2331041 tgtcattatgcaactttaaaaggaaaagctgcacttaaaatgcattaagaggtaacgtaaaacttcaaagtaaaaacatgt 2330961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 2331091 - 2331046
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||    
T  2331091 aggccaaaacatgttgtaattgtcattgatgagaattagaacaaat 2331046  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 48233935 - 48233891
Alignment:
Q  209 aggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||    
T  48233935 aggccataacatgttgtaattgtcattgatag-aattagaacaaat 48233891  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 14191144 - 14191240
Alignment:
Q  304 aacaaatggcatgtcattatgcaacaataaaaggaagaa---ctgcacttaaaatgcattaagaggtaaaatcaaacttcaaagtaaaaacatgtct 397  Q
    |||||||||| ||||||||||||||  |||||||||  |   ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  14191144 aacaaatggcgtgtcattatgcaactttaaaaggaaataaagctgcacttaaaatgcattaagaggtaacataaaacttcgaagtaaaaacatgtct 14191240  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 14191104 - 14191150
Alignment:
Q  208 taggccagaacatgttgtaattgtcattgatggtaattagaacaaat 254  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||    
T  14191104 taggccataacatgttgtaattgtcattgatgagaattagaacaaat 14191150  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 5179012 - 5178920
Alignment:
Q  359 ttaagaggtaaaatcaaacttcaaagtaaaaacatgtctatgagttgatgacag------caacattaaaattctaacataaagttaattttt 445  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||      |||||||||||||||||||||||| ||| ||||    
T  5179012 ttaagaggtaacatcaaacttcgaagtaaaaacatgtctatgagtttatgacagcgtcaacaacattaaaattctaacataaagctaaatttt 5178920  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 5179077 - 5179026
Alignment:
Q  261 tactaactctatgatactgttcagcattttccataat-tatcaaaacaaatg 311  Q
    ||||||||||| |||||| |||||||||||||||| | ||||||||||||||    
T  5179077 tactaactctacgatactattcagcattttccatagtgtatcaaaacaaatg 5179026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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