View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_10 (Length: 405)
Name: NF16596_low_10
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_10 |
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| [»] scaffold0173 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 4455564 - 4455757
Alignment:
| Q |
29 |
ttcagcaacaatatttcatagaaatagaatctaacga-attacaaaatagaatgcataattgtctcgagaacacataatgtcaaacatctccataaacat |
127 |
Q |
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| T |
4455564 |
ttcagcaacaatatttcatagaaatagaatctaacgggattacaaaatagaatgcataattgtctcgagaacacataatgtcaaacatctccataaacat |
4455663 |
T |
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| Q |
128 |
aatgctaaaacttgacaataatccaagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatc-attgagaacttgacatag |
220 |
Q |
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| T |
4455664 |
actgctaaaacttgacaataatccaagtcaaataggaccaggaatgcccttcttgctcatgctatccaaaacatcaattgagagattgacatag |
4455757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 4455755 - 4455817
Alignment:
| Q |
252 |
taggttttacgagattgaagatgaatttagaaccagcacaatactcatcaaaaaacaactcca |
314 |
Q |
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| T |
4455755 |
taggttttacgagattgaagatgaatttagaaccagcacaatactcatcaaaaaacaactcca |
4455817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 152 - 277
Target Start/End: Original strand, 30990174 - 30990299
Alignment:
| Q |
152 |
aagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatcattgagaacttgacatagaccaacacaatctgcaagaggaaactatcat |
251 |
Q |
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| T |
30990174 |
aagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatcattgagaacttgacatagaccaacacaatctgcaagaggaaactatcat |
30990273 |
T |
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| Q |
252 |
taggttttacgagattgaagatgaat |
277 |
Q |
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| T |
30990274 |
taggttttacgagattgaagatgaat |
30990299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 152 - 277
Target Start/End: Complemental strand, 43073471 - 43073346
Alignment:
| Q |
152 |
aagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatcattgagaacttgacatagaccaacacaatctgcaagaggaaactatcat |
251 |
Q |
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| T |
43073471 |
aagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatcattgagaacttgacatagaccaacacaatctgcaagaggaaactatcat |
43073372 |
T |
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| Q |
252 |
taggttttacgagattgaagatgaat |
277 |
Q |
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| T |
43073371 |
taggttttacgagattgaagatgaat |
43073346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0173 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 299
Target Start/End: Complemental strand, 14478 - 14322
Alignment:
| Q |
143 |
caataatccaagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatcattgagaacttgacatagaccaacacaatctgcaagagga |
242 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| | |
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| T |
14478 |
caataatccaagtcaaacaggaacaggaatgcccttcttgcccatgctatccaaaacatcatttagagcttgacatagacca--acaatctgcaagagca |
14381 |
T |
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| Q |
243 |
aactatcattaggtttt--acgagattgaagatgaatttagaaccagcacaatactcat |
299 |
Q |
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| T |
14380 |
aaccatcattaagttttcgatgagattgaagatggatttagaactaacacaatactcat |
14322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0173; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 299
Target Start/End: Complemental strand, 25443 - 25287
Alignment:
| Q |
143 |
caataatccaagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatcattgagaacttgacatagaccaacacaatctgcaagagga |
242 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| | |
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| T |
25443 |
caataatccaagtcaaacaggaacaggaatgcccttcttgcccatgctatccaaaacatcatttagagcttgacatagacca--acaatctgcaagagca |
25346 |
T |
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| Q |
243 |
aactatcattaggtttt--acgagattgaagatgaatttagaaccagcacaatactcat |
299 |
Q |
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||| ||||||| ||||| | ||||||||||||| ||||||||| | |||||||||||| |
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| T |
25345 |
aaccatcattaagttttcgatgagattgaagatggatttagaactaacacaatactcat |
25287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 299
Target Start/End: Complemental strand, 13004984 - 13004828
Alignment:
| Q |
143 |
caataatccaagtcaaataggtccagaaatgcccttcttgctcatgctatccaaaacatcattgagaacttgacatagaccaacacaatctgcaagagga |
242 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| | |
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| T |
13004984 |
caataatccaagtcaaacaggaacaggaatgcccttcttgcccatgctatccaaaacatcatttagagcttgacatagacca--acaatctgcaagagca |
13004887 |
T |
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| Q |
243 |
aactatcattaggtttt--acgagattgaagatgaatttagaaccagcacaatactcat |
299 |
Q |
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||| ||||||| ||||| | ||||||||||||| ||||||||| | |||||||||||| |
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| T |
13004886 |
aaccatcattaagttttcgatgagattgaagatggatttagaactaacacaatactcat |
13004828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 30894989 - 30895034
Alignment:
| Q |
348 |
atgtaaggcacaatgtgtgtttgattttcatgtaactttctgatga |
393 |
Q |
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| T |
30894989 |
atgtaaggcacaatgtgtgtttgattttcatgtaacttgctgatga |
30895034 |
T |
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