View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16596_low_11 (Length: 402)

Name: NF16596_low_11
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16596_low_11
NF16596_low_11
[»] chr6 (30 HSPs)
chr6 (191-391)||(5256482-5256683)
chr6 (19-193)||(5283432-5283606)
chr6 (248-391)||(5283603-5283747)
chr6 (19-184)||(5101038-5101203)
chr6 (19-184)||(5136139-5136304)
chr6 (18-180)||(5180993-5181155)
chr6 (19-188)||(5156233-5156402)
chr6 (19-184)||(5351310-5351475)
chr6 (19-184)||(5426810-5426975)
chr6 (61-186)||(5242777-5242902)
chr6 (18-185)||(5438920-5439087)
chr6 (19-181)||(5098124-5098286)
chr6 (62-156)||(5448547-5448641)
chr6 (39-188)||(5353103-5353252)
chr6 (61-180)||(5345940-5346059)
chr6 (19-147)||(5256370-5256498)
chr6 (18-188)||(5397952-5398122)
chr6 (18-179)||(5372012-5372173)
chr6 (61-188)||(5689168-5689295)
chr6 (61-185)||(5177645-5177769)
chr6 (56-186)||(5126889-5127019)
chr6 (39-184)||(5334092-5334234)
chr6 (61-182)||(5279473-5279594)
chr6 (291-382)||(5101235-5101327)
chr6 (291-382)||(5136336-5136428)
chr6 (265-391)||(5181183-5181310)
chr6 (19-102)||(23127530-23127613)
chr6 (26-105)||(2938898-2938977)
chr6 (299-367)||(5371902-5371970)
chr6 (71-101)||(5065724-5065754)
[»] chr3 (4 HSPs)
chr3 (19-188)||(47985613-47985782)
chr3 (19-188)||(47994900-47995069)
chr3 (19-188)||(48004187-48004356)
chr3 (19-188)||(48013472-48013641)
[»] chr7 (1 HSPs)
chr7 (18-156)||(36213140-36213278)
[»] chr4 (6 HSPs)
chr4 (20-140)||(4319523-4319643)
chr4 (20-100)||(4336896-4336976)
chr4 (20-100)||(4362546-4362626)
chr4 (39-84)||(4122884-4122929)
chr4 (20-100)||(4346350-4346430)
chr4 (40-102)||(25568826-25568888)
[»] chr2 (1 HSPs)
chr2 (72-153)||(22583563-22583644)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 191 - 391
Target Start/End: Original strand, 5256482 - 5256683
Alignment:
Q  191 tatcaccaggaagcaaattccaattgactccaaacaaatgcctatcgacttcaacctgtatgctcaaaattttattgacaagtatataaatatctccttt 290  Q
    |||||||||||||||||||||| |||||| ||| ||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  5256482 tatcaccaggaagcaaattccagttgacttcaaccaaattccaagagacttcaacctgtatgctcaaaattttattgacaagtatataaatatcacctta 5256581  T
Q  291 tcatttattcaacaattgattatataactttccttataacgtagttagtcatattttgacgttacaaataaatatttgcttggattcat-aaacagacta 389  Q
    ||||||||| ||||||||| |||||||||| |||||||| ||||||| |||||||||| ||||||||||||| |||| ||||||||||| ||||||||||    
T  5256582 tcatttattgaacaattgaatatataacttcccttataaggtagttaatcatattttggcgttacaaataaagattttcttggattcataaaacagacta 5256681  T
Q  390 tc 391  Q
    ||    
T  5256682 tc 5256683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 5283432 - 5283606
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||| ||||| |||||  ||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  5283432 gttgaagtatagacaatgcacatcattgacttcaagttacacccttcaacttgagggacatcaaaagttacagaagaaccttctgaactaaaggtcaacc 5283531  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaaggtat 193  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5283532 aatctggataactatcaccaggaagcaaacaatcaccactcctattgacatccatattctgtaaaagtaaggtat 5283606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 248 - 391
Target Start/End: Original strand, 5283603 - 5283747
Alignment:
Q  248 gtatgctcaaaattttattgacaagtatataaatatctccttttcatttattcaacaattgattatataactttccttataacgtagttagtcatatttt 347  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||  ||||||||| |||||||| ||||||| |||||||||    
T  5283603 gtatgctcaaaattttattgacaagtatataaatatcactttatcatttattcaacaattgaagatataacttcccttataaggtagttaatcatatttt 5283702  T
Q  348 gacgttacaaataaatatttgcttggattcat-aaacagactatc 391  Q
    || ||||||||||||||||||||||||||||| ||||||||||||    
T  5283703 gatgttacaaataaatatttgcttggattcataaaacagactatc 5283747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 5101038 - 5101203
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||| |||  |||||| ||||    
T  5101038 gttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttccgaaagaaaggttaacc 5101137  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaa 184  Q
    ||| |||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| ||||    
T  5101138 aatttggataactatcaccaggaagcaaacaaccaccactactattgacatctatattctgcaaaa 5101203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 5136139 - 5136304
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||| |||  |||||| ||||    
T  5136139 gttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaaccttccgaaagaaaggttaacc 5136238  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaa 184  Q
    ||| |||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| ||||    
T  5136239 aatttggataactatcaccaggaagcaaacaaccaccacttctattgacatctatattctgcaaaa 5136304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 5180993 - 5181155
Alignment:
Q  18 agttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaac 117  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||| |||    
T  5180993 agttgaattatagacaacgagcatcattgtcttcaagttacgtccttccaccaaagggacttcaaaagttacagaagaaccttcagaattaaaggttaac 5181092  T
Q  118 caatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgt 180  Q
    |||| ||||||||||||||  || || ||| ||||||||||   ||||| |||||||||||||    
T  5181093 caatttggataactatcactggggaggaaataaccaccactttcattgacatccatattctgt 5181155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 5156233 - 5156402
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||||||||| |||||| ||||||||| |||| ||||||||  | |||||||||||||||||| || |||| ||||    
T  5156233 gttgaagtatagacaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttcagaattataggttaacc 5156332  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaa 188  Q
    ||| ||||||||||||||  || || |||||||||||||||| ||||  |||||||||||| ||||||||    
T  5156333 aatttggataactatcactggggaggaaacaaccaccactcccattgccatccatattctggaaaagtaa 5156402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 5351475 - 5351310
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||| | |  |||||||||||||| || ||| ||||||||| |||| ||||||||  | ||||||||| |||| ||| ||||||| ||||    
T  5351475 gttgaagtatagactatgcacatcattgtcttcaagtcacgcccttccacttgaggaacttcaaatttcacagaagaaacttctgaaataaaggttaacc 5351376  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaa 184  Q
    ||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  5351375 aatttggataactatcaccaggaagcaaacaaccactactcctattgagatccatattctgcaaaa 5351310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 5426975 - 5426810
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||| | |  ||| |||||||||| |||||| ||||||||| | || |||| |||||||||||||||||||||||||||| |||| ||||    
T  5426975 gttgaagtatagactatgcacataattgtcttcaggttacgcccttccacttgtggaacttgaaaagttacagaagaaccttcagaactataggttaacc 5426876  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaa 184  Q
    | | ||||||||| |||| |||||||||| ||| |||||||||||||| |||||||||||| ||||    
T  5426875 actttggataactgtcaccaggaagcaaaaaactaccactcctattgagatccatattctgcaaaa 5426810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 61 - 186
Target Start/End: Original strand, 5242777 - 5242902
Alignment:
Q  61 ccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaaccaccactcc 160  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||   ||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  5242777 ccttccacttgagggacttcaaaagtaacagaagaaccttcagaatcgaaggttaaccaatctggataactgtcaccaggaagcaaacaaccaccactcc 5242876  T
Q  161 tattgatatccatattctgtaaaagt 186  Q
     |||   ||||||||||||| |||||    
T  5242877 cattctcatccatattctgttaaagt 5242902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5439087 - 5438920
Alignment:
Q  18 agttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaac 117  Q
    |||||||| |||||||| |  ||||| || | |||  ||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||    
T  5439087 agttgaagaatagacaatgcacatcaatgacatcaaattacgcccttccacttgagggacttgaaaagttacagaagaaccttcagaattaaaggttaac 5438988  T
Q  118 caatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaag 185  Q
    |||| ||||||||||||||  || || |||| |||| |||||| ||||| ||||||||||||| ||||    
T  5438987 caatttggataactatcaccggggagaaaacgaccatcactcccattgacatccatattctgtgaaag 5438920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 5098286 - 5098124
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  ||||||||| |||| | |||| ||||||||| | || |||| ||||||||| |||||||||||||||  |||||| ||||    
T  5098286 gttgaagtatagacaatgcacatcattgttttcaagctacggccttccacttggggaacttgaaaagttaccgaagaaccttcagaatgaaaggttaacc 5098187  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgta 181  Q
    |||||||||||| ||||   |||||||||||| |||| |||| ||||| ||||||||||||||    
T  5098186 aatctggataaccatcagtgggaagcaaacaatcaccgctcccattgagatccatattctgta 5098124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 5448641 - 5448547
Alignment:
Q  62 cttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaaccacca 156  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  ||||| ||||||||||||    
T  5448641 cttccacttgagggacttcaaaagttacagaagaaccttcagaattaaaggttaaccaatctggataactatcaccgggaaggaaacaaccacca 5448547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 5353103 - 5353252
Alignment:
Q  39 catcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaa 138  Q
    |||||||||||||| |||||| ||||||||  ||||||| | ||||||||||||||||||||||||    ||||| ||||||| |||||||||||||| |    
T  5353103 catcattgtcttcaagttacgcccttccaccagagggacatgaaaagttacagaagaaccttcagagtagaaggttaaccaatttggataactatcacca 5353202  T
Q  139 ggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaa 188  Q
    || || |||||||||||||| | ||| | ||||||||||||| |||||||    
T  5353203 gggaggaaacaaccaccacttccattaacatccatattctgtgaaagtaa 5353252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 5346059 - 5345940
Alignment:
Q  61 ccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaaccaccactcc 160  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||| | || || ||||||||||||||||| |||| |||||||||||||||||||||||    
T  5346059 ccttccacttgaggaacttcaaaagtaacagaagaaccttcagaattgaaagttaaccaatctggataactgtcaccaggaagcaaacaaccaccactcc 5345960  T
Q  161 tattgatatccatattctgt 180  Q
     |||   |||||||||||||    
T  5345959 cattctcatccatattctgt 5345940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 5256370 - 5256498
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||| | ||| |||||| ||||| |||   |||||||||||||||||||||||||||||||||||| |||| ||||    
T  5256370 gttgaagtatagacaatgcacatcattgacatcaagttacgcccttcaacttcggggacttcaaaagttacagaagaaccttcagaactataggttaacc 5256469  T
Q  119 aatctggataactatcacaaggaagcaaa 147  Q
    ||| ||||| |||||||| ||||||||||    
T  5256470 aatttggatgactatcaccaggaagcaaa 5256498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 5398122 - 5397952
Alignment:
Q  18 agttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaac 117  Q
    |||||||||||| |||| |  |||||||||||||| |||||| ||||||||  |||| ||||||||||||| ||||||||| ||||||||| | || |||    
T  5398122 agttgaagtatacacaatgcacatcattgtcttcaagttacgcccttccacatgaggaacttcaaaagttaaagaagaaccctcagaactataagttaac 5398023  T
Q  118 caatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaa 188  Q
    |||| |||||||||||| |  || || |||||||||||| ||| ||||  ||| |||||||  ||||||||    
T  5398022 caatttggataactatcgctggggaggaaacaaccaccattcccattgccatcgatattctagaaaagtaa 5397952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 5372173 - 5372012
Alignment:
Q  18 agttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaac 117  Q
    |||||||||| |||||  |  ||| |||||||||| |||||| ||||||||| |||| ||||||||  | ||||||||||||||||||||| |||| |||    
T  5372173 agttgaagtacagacattgcacataattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttcagaactataggttaac 5372074  T
Q  118 caatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctg 179  Q
    |||| |||||||||||||   || || ||||||||||||||||  |||  ||||||||||||    
T  5372073 caatttggataactatcattggggaggaaacaaccaccactcccgttgccatccatattctg 5372012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 5689168 - 5689295
Alignment:
Q  61 ccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaaccaccactcc 160  Q
    ||||||||| |||||||||||||  |||| |||||||||||  || | ||||| |||||||||||| ||||||||| ||||| |||||||||||||| ||    
T  5689168 ccttccacttgagggacttcaaacattaccgaagaaccttcgcaattgaaggttaaccaatctggacaactatcactaggaaacaaacaaccaccacacc 5689267  T
Q  161 tattgatatccatattctgtaaaagtaa 188  Q
     |||   |||||||||||||||||||||    
T  5689268 cattctcatccatattctgtaaaagtaa 5689295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 5177769 - 5177645
Alignment:
Q  61 ccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaaccaccactcc 160  Q
    ||||||||| |||||||||||||  |||| |||||||||||  || | ||||| |||||||||||| ||||||||| ||||| |||||||||||||| ||    
T  5177769 ccttccacttgagggacttcaaacattaccgaagaaccttcgcaattgaaggttaaccaatctggacaactatcactaggaaacaaacaaccaccacacc 5177670  T
Q  161 tattgatatccatattctgtaaaag 185  Q
     |||   ||||||||||||||||||    
T  5177669 cattctcatccatattctgtaaaag 5177645  T

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Target: chr6; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 5126889 - 5127019
Alignment:
Q  56 tacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaaccacc 155  Q
    |||| |||| |||| |||| |||||||||||||| ||||||||||| ||  | ||||  ||||||| |||||||||||||| ||||||||||| ||||||    
T  5126889 tacgccctttcacttgaggtacttcaaaagttaccgaagaaccttcggagttgaaggctaaccaatatggataactatcaccaggaagcaaactaccacc 5126988  T
Q  156 actcctattgatatccatattctgtaaaagt 186  Q
    || || | ||  |||||||||||||||||||    
T  5126989 acaccaactggcatccatattctgtaaaagt 5127019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 5334234 - 5334092
Alignment:
Q  39 catcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaa 138  Q
    |||||||||||||| |||||  ||||||||| |||| ||||||||  | |||||||||||||||||| || || | ||||||| ||||||||||||||      
T  5334234 catcattgtcttcaagttacccccttccacttgaggaacttcaaatttcacagaagaaccttcagaattatagcttaaccaatttggataactatcactg 5334135  T
Q  139 ggaagcaaacaaccaccactcctattgatatccatattctgtaaaa 184  Q
    |   | |||||||||||||||| ||||  |||||||||||| ||||    
T  5334134 g---ggaaacaaccaccactcccattgccatccatattctggaaaa 5334092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 5279594 - 5279473
Alignment:
Q  61 ccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaaccaccactcc 160  Q
    ||||||||| |||||||||||||  |||| |||||||||||  || | ||||| |||||||||||| |||||||||  |||| |||||||||||||| ||    
T  5279594 ccttccacttgagggacttcaaacattaccgaagaaccttcgcaattgaaggttaaccaatctggacaactatcacttggaaacaaacaaccaccacacc 5279495  T
Q  161 tattgatatccatattctgtaa 182  Q
     |||   |||||||||||||||    
T  5279494 cattctcatccatattctgtaa 5279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 5101235 - 5101327
Alignment:
Q  291 tcatttattcaacaattgattatataacttt-ccttataacgtagttagtcatattttgacgttacaaataaatatttgcttggattcataaa 382  Q
    ||||||||||||||||| |  || ||||||| ||| |||| ||| ||| |||||||||||||||||| | |||||||||||||||||||||||    
T  5101235 tcatttattcaacaattaaagatttaacttttcctcataaggtaattaatcatattttgacgttacagagaaatatttgcttggattcataaa 5101327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 5136336 - 5136428
Alignment:
Q  291 tcatttattcaacaattgattatataacttt-ccttataacgtagttagtcatattttgacgttacaaataaatatttgcttggattcataaa 382  Q
    ||||||||||||||||| |  || ||||||| ||| |||| ||| ||| |||||||||||||||||| | |||||||||||||||||||||||    
T  5136336 tcatttattcaacaattaaagatttaacttttcctcataaggtaattaatcatattttgacgttacagagaaatatttgcttggattcataaa 5136428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 5181183 - 5181310
Alignment:
Q  265 ttgacaagtatataaatatctccttttcatttattcaacaattgattatataactttccttataacgtagttagtcatattttgacgttacaaataaata 364  Q
    ||||||||||| | ||||||  ||  |||||| |||||||||||   |||| | ||| || |||| | | ||| |||||||||||||||||||| ||||     
T  5181183 ttgacaagtattttaatatcatctagtcatttgttcaacaattggagatatgatttttctcataaggcaattaatcatattttgacgttacaaagaaatc 5181282  T
Q  365 tttgcttggattcat-aaacagactatc 391  Q
    ||||||||||||||| ||||||||||||    
T  5181283 tttgcttggattcataaaacagactatc 5181310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 23127530 - 23127613
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttca 102  Q
    |||||||||| ||||||   ||| ||||||||||||||| | ||||||||| ||||  |||||||| |||||||||||||||||    
T  23127530 gttgaagtattgacaacacacattattgtcttcacgttatgcccttccacttgaggagcttcaaaacttacagaagaaccttca 23127613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 2938977 - 2938898
Alignment:
Q  26 tatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaa 105  Q
    ||||||||| |  |||||||||||||| |||||| ||||||||| |||| ||||||||  | |||||||||| |||||||    
T  2938977 tatagacaatgcacatcattgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaacattcagaa 2938898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 5371970 - 5371902
Alignment:
Q  299 tcaacaattgattatataactttccttataacgtagttagtcatattttgacgttacaaataaatattt 367  Q
    ||||||||| |  |||||| ||||||||||| ||| ||| ||||||||||  |||||||||||||||||    
T  5371970 tcaacaatttaagatataattttccttataaggtaattaatcatattttgttgttacaaataaatattt 5371902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 5065724 - 5065754
Alignment:
Q  71 gagggacttcaaaagttacagaagaaccttc 101  Q
    |||||||||||||||||||||||||||||||    
T  5065724 gagggacttcaaaagttacagaagaaccttc 5065754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 47985613 - 47985782
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||||||| | |||| | | ||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  47985613 gttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaacc 47985712  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaa 188  Q
    ||| |||||||||||||| ||| |||||||||| | |||||| ||| | | |||||||||||||||||||    
T  47985713 aatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaa 47985782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 47994900 - 47995069
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||||||| | |||| | | ||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  47994900 gttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaacc 47994999  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaa 188  Q
    ||| |||||||||||||| ||| |||||||||| | |||||| ||| | | |||||||||||||||||||    
T  47995000 aatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaa 47995069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 48004187 - 48004356
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||||||| | |||| | | ||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  48004187 gttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaacc 48004286  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaa 188  Q
    ||| |||||||||||||| ||| |||||||||| | |||||| ||| | | |||||||||||||||||||    
T  48004287 aatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaa 48004356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 48013472 - 48013641
Alignment:
Q  19 gttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacc 118  Q
    |||||||||||||||| |  |||||||||||| | |||| | | ||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  48013472 gttgaagtatagacaatgcacatcattgtctttaagttatgcctttccacttgagggacttcaaaagttaccgaagaaccttcagaattaaaggttaacc 48013571  T
Q  119 aatctggataactatcacaaggaagcaaacaaccaccactcctattgatatccatattctgtaaaagtaa 188  Q
    ||| |||||||||||||| ||| |||||||||| | |||||| ||| | | |||||||||||||||||||    
T  48013572 aatttggataactatcaccagggagcaaacaacaatcactcccattaacagccatattctgtaaaagtaa 48013641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 36213140 - 36213278
Alignment:
Q  18 agttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaac 117  Q
    |||||||| ||||||||    ||| |||||||| | ||||||||| |||||||||||||| |||||| |||||||||||||||   || | ||||| |||    
T  36213140 agttgaagaatagacaatacacattattgtctttaagttacgtccatccactcgagggacatcaaaaattacagaagaacctttgcaattgaaggttaac 36213239  T
Q  118 caatctggataactatcacaaggaagcaaacaaccacca 156  Q
    ||||| ||||||  ||||| ||| |||||||||||||||    
T  36213240 caatcaggataatgatcaccagggagcaaacaaccacca 36213278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 4319523 - 4319643
Alignment:
Q  20 ttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttcagaactaaaggtgaacca 119  Q
    |||||| |||||||| |  ||| |||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||| ||| | || |  |||||    
T  4319523 ttgaagaatagacaatgcacattattgtcttcaagctacgtccttccacttgagggacttcaaaaattacagaagaaccttctgaattgaaagctaacca 4319622  T
Q  120 atctggataactatcacaagg 140  Q
    ||| || ||| ||||||||||    
T  4319623 atccgggtaattatcacaagg 4319643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 4336976 - 4336896
Alignment:
Q  20 ttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaacctt 100  Q
    |||||| |||||||| |  |||||||||||||| | |||||||||||||  |||||||||||||| |||||||| ||||||    
T  4336976 ttgaagaatagacaatgcacatcattgtcttcaagctacgtccttccacatgagggacttcaaaatttacagaataacctt 4336896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 4362626 - 4362546
Alignment:
Q  20 ttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaacctt 100  Q
    |||||| |||||||| |  ||| |||||||||| | ||| |||||||||| |||||||||||||| |||||||| ||||||    
T  4362626 ttgaagaatagacaatgcacattattgtcttcaagctacatccttccacttgagggacttcaaaaattacagaataacctt 4362546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 4122884 - 4122929
Alignment:
Q  39 catcattgtcttcacgttacgtccttccactcgagggacttcaaaa 84  Q
    |||||||||||||| | |||||||||||||| ||||||||||||||    
T  4122884 catcattgtcttcaagctacgtccttccacttgagggacttcaaaa 4122929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 4346430 - 4346350
Alignment:
Q  20 ttgaagtatagacaacgagcatcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaacctt 100  Q
    |||||| |||||||| |  ||| |||||||||| | || ||||||||||| |||||||||||||  |||||||| ||||||    
T  4346430 ttgaagaatagacaatgcacattattgtcttcaagctatgtccttccacttgagggacttcaaagattacagaataacctt 4346350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 25568888 - 25568826
Alignment:
Q  40 atcattgtcttcacgttacgtccttccactcgagggacttcaaaagttacagaagaaccttca 102  Q
    |||||||| |||| |  ||| |||||||||||||| ||||||||| |||| ||||||||||||    
T  25568888 atcattgttttcaagacacgcccttccactcgaggtacttcaaaaattactgaagaaccttca 25568826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 22583563 - 22583644
Alignment:
Q  72 agggacttcaaaagttacagaagaaccttcagaactaaaggtgaaccaatctggataactatcacaaggaagcaaacaacca 153  Q
    |||||||| ||||||||||||||||||||   || | ||| | ||||||| ||||||| |||||| ||||||||||||||||    
T  22583563 agggactttaaaagttacagaagaaccttggcaattgaagtttaaccaatttggataattatcaccaggaagcaaacaacca 22583644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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