View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_14 (Length: 370)
Name: NF16596_low_14
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 50120047 - 50120390
Alignment:
| Q |
17 |
caattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120047 |
caattggagctccactaatatgagcctcgtagtttattgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctac |
50120146 |
T |
|
| Q |
117 |
tgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgcaaagc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50120147 |
tgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattacaaagc |
50120246 |
T |
|
| Q |
217 |
tcttcagtagatatagggtatcttaaagttggatagaaagatggatagaaaccacatatatctgccccaaccattggcatgccaaatattccaaagttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120247 |
tcttcagtagatatagggtatcttaaagttggatagaaagatggatagaaaccacatatatctgccccaaccattggcatgccaaatattccaaagttga |
50120346 |
T |
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| Q |
317 |
ggatggtagatatagtatatcttaaatcctcccatgttcctttg |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50120347 |
ggatggtagatatagtatatcttaaatcctcccatgttcctttg |
50120390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 50110057 - 50110264
Alignment:
| Q |
17 |
caattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctac |
116 |
Q |
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||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
50110057 |
caattggggctccactaatatgagcctcatagtttagggtgtacagatagggtaggagcttatacctcatccccaatgcatttctagctgattcggctac |
50110156 |
T |
|
| Q |
117 |
tgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgcaaagc |
216 |
Q |
| |
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| |||||| |||||||||||||||||||| || | ||| ||| ||||| || || ||||||||||||||||||||||||||||||||||||||| |
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| T |
50110157 |
cgtctcccactggtaaagttcttgtctaggagagtagtagtttgcatggtcccttgaaaatggatagaaagcaccaacttcaatccacctattgcaaagc |
50110256 |
T |
|
| Q |
217 |
tcttcagt |
224 |
Q |
| |
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|||||||| |
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| T |
50110257 |
tcttcagt |
50110264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 50110271 - 50110342
Alignment:
| Q |
258 |
tggatagaaaccacatatatctgccccaaccattggcatgccaaatattccaaagttgaggatggtagatat |
329 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||| || || || |||||||| |
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|
| T |
50110271 |
tggatagaaaccacatatatctgaaccaaccattggcacaccaaatattccaaaattcagcatagtagatat |
50110342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 23934745 - 23934538
Alignment:
| Q |
17 |
caattggagctccactaatatgagcctcgtagtttagtgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctac |
116 |
Q |
| |
|
||||||| | |||||||| |||||| || ||||||| ||||||| ||| ||||||| ||| ||||| || || || |||||||| ||||||| |||||| |
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| T |
23934745 |
caattggtgatccactaacatgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcatttcttgctgattgagctac |
23934646 |
T |
|
| Q |
117 |
tgactcccattggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattgcaaagc |
216 |
Q |
| |
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||| |||||||||||||| |||||||| ||||| | ||| |||||| || || || || ||||||||||||||||||||||| |||||||| || |
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| T |
23934645 |
tgaatcccattggtaaagctcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaatccatctattgcatagt |
23934546 |
T |
|
| Q |
217 |
tcttcagt |
224 |
Q |
| |
|
|||||||| |
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|
| T |
23934545 |
tcttcagt |
23934538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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