View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_15 (Length: 365)
Name: NF16596_low_15
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 9709815 - 9710011
Alignment:
| Q |
6 |
cagagaatgatttggaagggagtgtggaacagttggcagctttggtagaccaagaaaagctttggcagtttgttctcctaaggaactgttaattagatgg |
105 |
Q |
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| T |
9709815 |
cagaaaatgatttggaagggagtgtggaacagttggcagctttgatagaccaagaaaagttgatgt-gtttgttctcctaaggaactgttaattagatgg |
9709913 |
T |
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| Q |
106 |
tacaagaaaatacttaaaatcacattgaaaattaaaagtgatactatttttaagacaaatacttctttataaatgttatagttaccatggggtatata |
203 |
Q |
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| T |
9709914 |
tacaagaaaatacttaaaatcacattgaaaattaaaagtgatactctttttaagacaaatacttttttataaatgttatagttaccatgaggtatata |
9710011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 9710068 - 9710157
Alignment:
| Q |
260 |
gcatactatagtacccatagtctgaattttgaacgttggatagaaaattacgatttgatcttatccttacaatttctagttacttaaaaa |
349 |
Q |
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| T |
9710068 |
gcatactatagtgctcatagtctgaattttgaacgtcggatagaaaattacgatttgatcttatccttacaatttttagttacttaaaaa |
9710157 |
T |
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