View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_17 (Length: 355)
Name: NF16596_low_17
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 55 - 344
Target Start/End: Complemental strand, 27848609 - 27848323
Alignment:
| Q |
55 |
tccaccaggaacat---caccacctcctttgcccggtccaccaggaacatacccaccacctacatcgcctcctccaccaggaatat---caccacctcct |
148 |
Q |
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| T |
27848609 |
tccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc---------gtctcctccaccaggaacatgtccaccaactcct |
27848519 |
T |
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| Q |
149 |
tcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacgggtaaccagggacacattcaccgcctccta |
248 |
Q |
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| T |
27848518 |
tcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacgggtaacctgggacacattcaccgcctccta |
27848419 |
T |
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| Q |
249 |
ccccaggaacaaatccaccacctcctacacccgggtaaccaggaacaaatccaccacttcccgtacctggtccatcaggaccatatccaccgcctg |
344 |
Q |
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| T |
27848418 |
ccccaggaacaaatccaccacctcctacacccgggtaaccaggaacaaatccaccacttcccgtacctggtccatcaggaccatatccaccgcctg |
27848323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 27848765 - 27848589
Alignment:
| Q |
1 |
accacttccttcaccaggtctaacaggaacatacccaacgcctcctttgcctcctccaccaggaacatcaccacctcctttgcccggtccaccaggaaca |
100 |
Q |
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| T |
27848765 |
accacttccttcaccaggtccaacaggaacatacccaacgcctcctttccctccttcaccaggaacatcaccacctccttcgcccggtccaccaggaaca |
27848666 |
T |
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| Q |
101 |
tacccaccacctacatcgcctcctccaccaggaatatcaccacctccttcacccggtccaccaggaacatatccacc |
177 |
Q |
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| T |
27848665 |
tacccaccacctacatcacctcctccaccaggaatatcaccacctccttcacccggtccaccaggaacatgtccacc |
27848589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 27848785 - 27848658
Alignment:
| Q |
50 |
cctcctccaccaggaacatcaccacctcctttgcccggtccaccaggaacatacccaccacctacatcgcctcctccaccaggaatatcaccacctcctt |
149 |
Q |
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||||||||||| | ||||||||| ||||| || |||||| |||||||||||||| | ||| | | |||||| ||||||||| |||||||||||||| |
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| T |
27848785 |
cctcctccacctccaccatcaccacttccttcaccaggtccaacaggaacatacccaacgcctcctttccctccttcaccaggaacatcaccacctcctt |
27848686 |
T |
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| Q |
150 |
cacccggtccaccaggaacatatccacc |
177 |
Q |
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| T |
27848685 |
cgcccggtccaccaggaacatacccacc |
27848658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 27848550 - 27848490
Alignment:
| Q |
51 |
ctcctccaccaggaacat---caccacctcctttgcccggtccaccaggaacatacccacc |
108 |
Q |
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| T |
27848550 |
ctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc |
27848490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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