View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_22 (Length: 277)
Name: NF16596_low_22
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_22 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 27613483 - 27613748
Alignment:
| Q |
1 |
tttggttcccatatcctattgttgcaaatgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattattaggaattgtaggtttttg |
100 |
Q |
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| T |
27613483 |
tttggttcccatattctattgttgcaaatgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattattag-aattgtaggtttttg |
27613581 |
T |
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| Q |
101 |
gttcaaagatttatacattcaaaaaataattattttcaaagatctctattttaataatatcatggtttgttagatagacatgnnnnnnnccgatcttaat |
200 |
Q |
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| T |
27613582 |
gttcaaagatttatacattcaaaaaataattgttgtcaaagatctctattttaataatatcatggtttgttggatagacatgtttttttccgatcttaat |
27613681 |
T |
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| Q |
201 |
taaacatttttctcaagcttggtttgacatattcatcacactagtacaattgtttggtatgattcat |
267 |
Q |
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| T |
27613682 |
taaacgttttcctcgagcttggtttgacatattcatcacactagtacaattgtttggtatgattcat |
27613748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 514288 - 514386
Alignment:
| Q |
1 |
tttggttcccatatcctattgttgcaaatgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattattaggaattgtaggttttt |
99 |
Q |
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|||||||| || |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
514288 |
tttggttcacacgtcctattgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggttttt |
514386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 18307633 - 18307535
Alignment:
| Q |
1 |
tttggttcccatatcctattgttgcaaatgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattattaggaattgtaggttttt |
99 |
Q |
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| T |
18307633 |
tttggttcacacgtcctattgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggttttt |
18307535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 6939449 - 6939547
Alignment:
| Q |
1 |
tttggttcccatatcctattgttgcaaatgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattattaggaattgtaggttttt |
99 |
Q |
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|||||||| || |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6939449 |
tttggttcacacgtcctattgcggcaaatgcttgtcaaaaagcgtttgtaactaatcgtgtgggggattttggtttattattaggaattttaggttttt |
6939547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 177012 - 177082
Alignment:
| Q |
29 |
tgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattattaggaattgtaggttttt |
99 |
Q |
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| T |
177012 |
tgcttgtcaaaaagcttttgtaactaatcgtgtaggggattttggtctattattaggaattttaggttttt |
177082 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 21949058 - 21949113
Alignment:
| Q |
44 |
gtttgtaactaatcatgtgggggattttggtttattattaggaattgtaggttttt |
99 |
Q |
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| T |
21949058 |
gtttgtaactaatcgtgtgggggattctggtttattattaggaattttaggttttt |
21949113 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 41909998 - 41909916
Alignment:
| Q |
14 |
tcctattgttgcaaatgcttgtcaaaaagtgtttgtaactaatcatgtgggggattttggtttattattaggaattgtaggttttt |
99 |
Q |
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|||||||| ||||||||||||||||||| |||||||| ||||| |||||| |||||||||||||||| |||| ||| ||||| |
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| T |
41909998 |
tcctattgcggcaaatgcttgtcaaaaagcgtttgtaattaatcgtgtggg---atttggtttattattagaaattttagattttt |
41909916 |
T |
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