View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16596_low_24 (Length: 223)
Name: NF16596_low_24
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 1461881 - 1461695
Alignment:
| Q |
15 |
atgaacacctaattaattatttaatttaattaaattgaatgaatactacaaaaattgtggacactaaaggtgggatgttagttacatatatcacacagta |
114 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1461881 |
atgaacacctaattaatta---aat--aattaaattgaatgaatactacaaaaattgtggacactaaaggtgggatgttagttacatatatcacacagta |
1461787 |
T |
|
| Q |
115 |
tataagtcaaagtccttttaggttaggttagtaacccttgtgtgactgtgagttctaaaatggtggtaaaaggaatggaagatgaagtaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1461786 |
tataagtcaaagtccttttaggttaggttagtaacccttgtgtgactgtgagttctaaaatggtggtaaaaggaatggaagatgaagtaatt |
1461695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 1456646 - 1456613
Alignment:
| Q |
173 |
aatggtggtaaaaggaatggaagatgaagtaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1456646 |
aatggtggtaaaaggaatggaagatgaagtaatt |
1456613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 1555242 - 1555275
Alignment:
| Q |
173 |
aatggtggtaaaaggaatggaagatgaagtaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1555242 |
aatggtggtaaaaggaatggaagatgaagtaatt |
1555275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 1566718 - 1566751
Alignment:
| Q |
173 |
aatggtggtaaaaggaatggaagatgaagtaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1566718 |
aatggtggtaaaaggaatggaagatgaagtaatt |
1566751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 1455021 - 1454978
Alignment:
| Q |
163 |
tgagttctaaaatggtggtaaaaggaatggaagatgaagtaatt |
206 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
1455021 |
tgagctctaaaatggtggtaaaaggcatggaagatcaagtaatt |
1454978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 1555178 - 1555207
Alignment:
| Q |
133 |
taggttaggttagtaacccttgtgtgactg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1555178 |
taggttaggttagtaacccttgtgtgactg |
1555207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 1566654 - 1566683
Alignment:
| Q |
133 |
taggttaggttagtaacccttgtgtgactg |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1566654 |
taggttaggttagtaacccttgtgtgactg |
1566683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University