View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16596_low_3 (Length: 547)

Name: NF16596_low_3
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16596_low_3
NF16596_low_3
[»] chr5 (11 HSPs)
chr5 (19-306)||(39858107-39858394)
chr5 (344-536)||(39857913-39858110)
chr5 (86-299)||(39848360-39848573)
chr5 (97-311)||(39898972-39899185)
chr5 (85-316)||(39911999-39912231)
chr5 (222-316)||(38971851-38971945)
chr5 (85-262)||(39865475-39865651)
chr5 (85-318)||(37466852-37467079)
chr5 (331-395)||(39848261-39848325)
chr5 (85-128)||(38967973-38968016)
chr5 (31-69)||(39848649-39848687)
[»] chr1 (1 HSPs)
chr1 (399-439)||(9939563-9939603)
[»] scaffold0057 (1 HSPs)
scaffold0057 (399-436)||(43734-43771)
[»] chr4 (1 HSPs)
chr4 (414-458)||(54175156-54175200)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 39858394 - 39858107
Alignment:
Q  19 tttatgcttttggttttgtaatttatattataacttatgaattttgtgatgtgatatatagaacatggttgctagagagtttggcatactagctcaattc 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858394 tttatgcttttggttttgtaatttatattataacttaagaattttgtgatgtgatatatagaacatggttgctagagagtttggcatactagctcaattc 39858295  T
Q  119 cagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatacatcgaggaagcaaaatctgtaagttcatgagatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858294 cagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatacatcgaggaagcaaaatctgtaagttcatgagatt 39858195  T
Q  219 gcttgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactttttcatctctggttgttgggtttta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858194 gcttgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactttttcatctctggttgttgggtttta 39858107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 344 - 536
Target Start/End: Complemental strand, 39858110 - 39857913
Alignment:
Q  344 tttatgtttaatgttgaatctgctcatgacatctatatcaagttgatacttaattgtgggacccccctctcggacc----ctgcatatgcgggagcttta 439  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  39858110 tttatgtttaatgttgaatctgctcatgacatctatatcaagctgatacttaattgtgggacccccctctcggaccctgcctgcatatgcgggagcttta 39858011  T
Q  440 tcaaaccgggctgccctttctctatgttgattgtttttggatcccatag-nnnnnnncccttaatgcttgtgagggtgcttaattttttgtgattcat 536  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  39858010 tcaaaccgggctgccctttctctatattgattgtttttggatcccatagttttttttcccttaatgcttgtgagggtgcttaattttttgtgattcat 39857913  T

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Target: chr5; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 86 - 299
Target Start/End: Complemental strand, 39848573 - 39848360
Alignment:
Q  86 gttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacataca 185  Q
    ||||||| |||||||||||||| |||||||||||||||||||||| | ||| ||||||||| ||||  ||||| |||||||| ||||| ||||||| |||    
T  39848573 gttgctaaagagtttggcataccagctcaattccagcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatctcggcttttgacacaca 39848474  T
Q  186 tcgaggaagcaaaatctgtaagttcatgagattgcttgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactttttc 285  Q
    |||| |||||| ||||||||| ||||  | ||||||||||  ||||||||||||||||||||||||| || ||| |||| ||||| ||||||||||||||    
T  39848473 tcgatgaagcacaatctgtaaattcacaaaattgcttgaaacttttcaatattgttttgctcatatagccgctttaagcatcataatttatgactttttc 39848374  T
Q  286 atctctggttgttg 299  Q
    ||||||| ||||||    
T  39848373 atctctgattgttg 39848360  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 97 - 311
Target Start/End: Complemental strand, 39899185 - 39898972
Alignment:
Q  97 gtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatacatcgaggaagca 196  Q
    ||||||||||| |||||||||||||||||||||| | ||| ||||||||  ||||  ||||| |||||| | ||||||||||||| |||| |||||||||    
T  39899185 gtttggcataccagctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcgaccttctcggcctttgacaaacattgaggaagca 39899086  T
Q  197 aaatctgtaagttcatgagattgct-tgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactttttcatctctggtt 295  Q
      | |||||| ||||| ||||  || |||||  ||||||||||  |||||||| |||  ||||||||||||| ||||||||||||||||| | | |||||    
T  39899085 ggacctgtaaattcatcagat--ctatgaagcctttcaatatttatttgctcacatactcccttcaagcttcttattttatgactttttcgtttttggtt 39898988  T
Q  296 gttgggttttaggcaa 311  Q
     |||| ||||||||||    
T  39898987 tttggcttttaggcaa 39898972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 85 - 316
Target Start/End: Complemental strand, 39912231 - 39911999
Alignment:
Q  85 ggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatac 184  Q
    |||||| | |||||| |||||||  |||| |||||||||||||||| | |||  ||||||| |||||  ||||||||| |||| |||||| |||||||||    
T  39912231 ggttgccaaagagttcggcataccggctcgattccagcgcttttggctatgggcaaagcgtctaaaccatacatatcgtccatttcggccattgacatac 39912132  T
Q  185 atcgaggaagcaaaatctgtaagttcatgagattgct-tgaag--tttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactt 281  Q
    || |||||||||  | |||||| || |||||||  || |||||  ||||| |||||| ||||||||||||| |||||||||||||| |||| | |||| |    
T  39912131 attgaggaagcagcacctgtaaatttatgagat--ctatgaagcttttttgaatattattttgctcatatacccccttcaagcttcttattctgtgacct 39912034  T
Q  282 tttcatctctggttgttgggttttaggcaaatgtt 316  Q
    |||||| |||| ||||| | ||||||| |||||||    
T  39912033 tttcatttctgattgtttgcttttaggaaaatgtt 39911999  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 38971851 - 38971945
Alignment:
Q  222 tgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactttttcatctctggttgttgggttttaggcaaatgtt 316  Q
    ||||| ||||||||||  ||||||||||||| ||||||||| |||| ||||||||||||||||  | ||||||||||||||||||||||| ||||    
T  38971851 tgaagcttttcaatatgattttgctcatatacccccttcaaacttcttattttatgacttttttgtttctggttgttgggttttaggcaagtgtt 38971945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 39865651 - 39865475
Alignment:
Q  85 ggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatac 184  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||| | |    |||||||| ||||| ||||| ||| |||| ||| || ||||||  |    
T  39865651 ggttgctaaagagttttgcataccagctcaattccagcgcttttgggtatttgcaaagcgtgaaaacgatacatgtcgtccatttcgtccgttgacacgc 39865552  T
Q  185 atcgaggaagcaaaatctgtaagttcatgagattgcttgaagtttttcaatattgttttgctcatatatccccttcaa 262  Q
    || |||||||||  | |||||| ||||| ||||  ||||||| || |||||||| ||||||| ||||| |||||||||    
T  39865551 attgaggaagcaggacctgtaaattcataagatctcttgaagcttatcaatattattttgctgatata-ccccttcaa 39865475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 85 - 318
Target Start/End: Complemental strand, 37467079 - 37466852
Alignment:
Q  85 ggttgctagagagtttggcatactagctcaattccagcgcttttggatttggaaaaagcgtgtaaacggtacatatcgaccatatcggcctttgacatac 184  Q
    |||||||| |||||| |||||||  | ||||||||||||||||||| | |||  |||||||  ||||  ||||||||| ||  |||| || |||||| |     
T  37467079 ggttgctaaagagttcggcatacctgttcaattccagcgcttttggctatgggcaaagcgtcaaaaccatacatatcgtcctaatcgtccattgacacaa 37466980  T
Q  185 atcgaggaagcaaaatctgtaagtt-catgagattgcttgaagtttttcaatattgttttgctcatatatccccttcaagcttcatattttatgactttt 283  Q
    || ||||||||| |||||||||||| |||||  |||||| |||||| || ||||  |||| ||||||||   | |||||||||| ||||||  ||| |||    
T  37466979 attgaggaagcacaatctgtaagttccatgatcttgcttaaagtttatcgatatcatttttctcatata---ctttcaagcttcttattttgcgaccttt 37466883  T
Q  284 tcatctctggttgttgggttttaggcaaatgttgg 318  Q
    |||| ||    |||||| |||||||||||||||||    
T  37466882 tcatgtc----tgttggcttttaggcaaatgttgg 37466852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 39848325 - 39848261
Alignment:
Q  331 cttttacccctcatttatgtttaatgttgaatctgctcatgacatctatatcaagttgatactta 395  Q
    |||||||||||||||||||||  |||||||||||||||||| ||| ||||||||| |||||||||    
T  39848325 cttttacccctcatttatgttacatgttgaatctgctcatgtcatttatatcaagctgatactta 39848261  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 38967973 - 38968016
Alignment:
Q  85 ggttgctagagagtttggcatactagctcaattccagcgctttt 128  Q
    |||||||| |||||||||||||| ||||||||||||||||||||    
T  38967973 ggttgctaaagagtttggcataccagctcaattccagcgctttt 38968016  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 39848687 - 39848649
Alignment:
Q  31 gttttgtaatttatattataacttatgaattttgtgatg 69  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  39848687 gttttgtaatttatattataacttatgaattatgtgatg 39848649  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 9939563 - 9939603
Alignment:
Q  399 gtgggacccccctctcggaccctgcatatgcgggagcttta 439  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  9939563 gtgggacccccttctcggaccctgcgtatgcgggagcttta 9939603  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 43734 - 43771
Alignment:
Q  399 gtgggacccccctctcggaccctgcatatgcgggagct 436  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  43734 gtgggacccctttctcggaccctgcatatgcgggagct 43771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 54175156 - 54175200
Alignment:
Q  414 cggaccctgcatatgcgggagctttatcaaaccgggctgcccttt 458  Q
    ||||||||||||||||||||||||||    |||||||||||||||    
T  54175156 cggaccctgcatatgcgggagctttagtgcaccgggctgcccttt 54175200  T

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