View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_4 (Length: 527)
Name: NF16596_low_4
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 12 - 466
Target Start/End: Complemental strand, 40673057 - 40672603
Alignment:
| Q |
12 |
gagatgaatatggcgatgtgactctcaagacatcaactcttcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccact |
111 |
Q |
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| T |
40673057 |
gagatgaatatggcgatgtgactctcaagacatcaactattcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccact |
40672958 |
T |
|
| Q |
112 |
tcacttggccgagagcattgttcgaaggcgccgtaaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatcttt |
211 |
Q |
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| T |
40672957 |
tcacttggccgagagcattgttcggaggcgccgtgaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatcttt |
40672858 |
T |
|
| Q |
212 |
gtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtg |
311 |
Q |
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| T |
40672857 |
gtttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtg |
40672758 |
T |
|
| Q |
312 |
taacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtgtgctgtttgattaatttatgaattatttatatgt |
411 |
Q |
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| T |
40672757 |
taacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtgtgctgtttgattaatttatgaattatttatatgt |
40672658 |
T |
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| Q |
412 |
atattttcaagacttggtatctggctttgtgatcttaaattgtaggaaatcttgt |
466 |
Q |
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| T |
40672657 |
atattttcaagacttggtatctggctttgtgatcttaaattgtaggaaatcttgt |
40672603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 359 - 466
Target Start/End: Complemental strand, 40667711 - 40667605
Alignment:
| Q |
359 |
tatattataggtatctgtgtgctgtttgattaatttatgaattatttatatgtatattttcaagacttggtatctggctttgtgatcttaaattgtagga |
458 |
Q |
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||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40667711 |
tatattataggaatctgtgtgctgtttgattaacttatga-ttgtttatatgtatattttcaagacttggtatctggctttgtgatcttaaattttagga |
40667613 |
T |
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| Q |
459 |
aatcttgt |
466 |
Q |
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||||||| |
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| T |
40667612 |
gatcttgt |
40667605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 32 - 283
Target Start/End: Complemental strand, 40683354 - 40683106
Alignment:
| Q |
32 |
actctcaagacatcaactcttcaacctttcaacggcagcatgattgagctgaagctgaaagtagactcgtatgagccacttcacttggccgagagcattg |
131 |
Q |
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| T |
40683354 |
actctaaatacatcaactattcaacctttcaacggtagcatgattgagatgaagctgaaggtagactcgtgtgagcc---tcacgtgactaacaacattt |
40683258 |
T |
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| Q |
132 |
ttcgaaggcgccgtaaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacattt |
231 |
Q |
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||| || ||||| ||||||||||||||| |||||| |||||| |||||||||||||| ||| |||| ||||||||| ||||| ||| | ||| |
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| T |
40683257 |
atcgtagccgccgagaacatggaagggttgaattcggtctcaaattgttcacttccatccagtttaagaaagatatctttgaatccaactggataacttt |
40683158 |
T |
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| Q |
232 |
gaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaat |
283 |
Q |
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|||| ||||||||||||||| ||||||| |||||| |||||||||||||| |
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| T |
40683157 |
gaaggttgtttgctacccacttagctttgttatttcgcaaaatgtctacaat |
40683106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 40672570 - 40672522
Alignment:
| Q |
464 |
tgttaattgtgtattagattatagtggcttcccttgtttaagtttgttt |
512 |
Q |
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| T |
40672570 |
tgttaattgtgtattagattatagtggcttcccttgtttaagtttgttt |
40672522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 40667568 - 40667520
Alignment:
| Q |
464 |
tgttaattgtgtattagattatagtggcttcccttgtttaagtttgttt |
512 |
Q |
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| T |
40667568 |
tgttaattgtgtattagatcatagtggatgcccatgtttaagtttgttt |
40667520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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