View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_7 (Length: 420)
Name: NF16596_low_7
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 402
Target Start/End: Original strand, 6733873 - 6734280
Alignment:
| Q |
6 |
gagatgaatatgatgttaattagatcttgtttatgttaaccacgtcattaccaacagattgagcttaaccacaa---gtccaacgaatgacattttattt |
102 |
Q |
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| T |
6733873 |
gagatgaatatgatgttaattagatcttgtttatgttaaccacgtcattaccaacagattgagcttaaccacaacaagtccaacgaatgacattttattt |
6733972 |
T |
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| Q |
103 |
ttgtataaagaaatagggttccattatgatctaagaaatgatatttgactatgatatgaatataactagttaannnnnnnngtttatactaatttaacca |
202 |
Q |
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| T |
6733973 |
ttgtataaagaaatagggttccattatgatctaagaaatgatatttgactatgatatgaatataactagttaa--ttttttgtttatactaatttaacca |
6734070 |
T |
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| Q |
203 |
cgtcataatcaaataattgagtttaacagaacaagtccac--atgacattttacaagaatatg-------aacagaagttgtgaatttacaatggaat-g |
292 |
Q |
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| T |
6734071 |
cgtcataatcaaagaattgagtttaacagaacaagtccacatatgacattttacaagaatatgacaggacaacagaagttgtgaatttacaatggaatgg |
6734170 |
T |
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| Q |
293 |
ggtattctattcccactattactaatataacaataaaagcctcatcatgagcttcatctattgaattgaaatgtcaagattaaggtaagggttgttagca |
392 |
Q |
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| T |
6734171 |
ggtattctattcccactattactaatataacaataaaagcctcatcatgagcttcatctattgaattgaaatgtcaagattaaggtaagggttgttagca |
6734270 |
T |
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| Q |
393 |
gcattagtgt |
402 |
Q |
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| T |
6734271 |
gcattagtgt |
6734280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 6746629 - 6746687
Alignment:
| Q |
265 |
acagaagttgtgaatttacaatggaatggg-tattctattcccactattactaatataa |
322 |
Q |
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| T |
6746629 |
acagaagttgtcaatttacaattgaattggatattcaattcccactgttactaatataa |
6746687 |
T |
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