View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_8 (Length: 419)
Name: NF16596_low_8
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 73 - 404
Target Start/End: Original strand, 35231555 - 35231890
Alignment:
| Q |
73 |
gtatgaaacaaatacataaattctggtccaatttccacgtgtatttcaagggagtttattatgttgggcggtggacattgtcaaagtggcttacgtctct |
172 |
Q |
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| T |
35231555 |
gtatgaaacaaatacataaattctggtccaatttccacgtgtatttcaagggagttaattatgttgggcggtggacattgtcaaagtggcttacgtctct |
35231654 |
T |
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| Q |
173 |
gaattgacacgtgttgctagaaattgttgggtaattatgcattgcatttaacagtcgatttcgtgaattataaatgagcacacaataatcc-annnnnnn |
271 |
Q |
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| T |
35231655 |
gaattgacacgtgttgctagaaattgttgtgtaattatgcattgcatttaacagtcgatttcgtgaattataaatgagcacacaataatccttttttttt |
35231754 |
T |
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| Q |
272 |
ncttattgtaggcggctaccattactgtgatgtgacgaaagcgatcacttggttttgtttgcttataaatgggatgaatcaaagtagatttata---tat |
368 |
Q |
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| T |
35231755 |
tcttattgtaggcggctaccattactgtgatgtgacgaaagcgatcacttggttttgtttgtttataaatgggatgaatcaaagtagatttatatattat |
35231854 |
T |
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| Q |
369 |
tatgatcatgattttcatgttaataacaccaaaaat |
404 |
Q |
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| T |
35231855 |
tatgatcatgattttcatgttaataacaccaaaaat |
35231890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 35231478 - 35231519
Alignment:
| Q |
17 |
aatgtttaatgaaaatgatattaacccaaatgaaggaagtaa |
58 |
Q |
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| T |
35231478 |
aatgtttgatgaaaatgatattaacccaaatgaaggaagtaa |
35231519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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