View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16596_low_9 (Length: 417)
Name: NF16596_low_9
Description: NF16596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16596_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 34 - 417
Target Start/End: Complemental strand, 42244334 - 42243950
Alignment:
| Q |
34 |
tgactataaggaaaaccacgcacataagtcatcaagtgaacgctatgcataagaatgcttataatatggactcaaatataagcaaaaataat-atttgtt |
132 |
Q |
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| T |
42244334 |
tgactataaggaaaaccatgcacataagtcatcaagtgaatgctatgcataagagggcttataatatggactcaaatataagcaaaaataatcatttgtt |
42244235 |
T |
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| Q |
133 |
tgtttaaaatctgggtgttatatataataaggataaaaaatcttttcttttttagtaaatcaaacgtatcttctgtgcgtgactataaagactaatcatt |
232 |
Q |
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| T |
42244234 |
tgcttaaaatctgggtgttatatataataaggataaaaaatcttttcttttttagtaaatcaaacgtatcttctgtgcgtgactataaagactaatcatt |
42244135 |
T |
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| Q |
233 |
ttaaggtcattgagatttatttaaaaggttgatctcttgcaacaaatggtttttcatgcactaaccaatgatcaaatcttggaccaaatagttaagagat |
332 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42244134 |
ttaaggttattgagatttatttaaaaggttgatctcttacaacaaatgttttttcatgcactaaccaatgatcaaatcttggaccaaataattaagagat |
42244035 |
T |
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| Q |
333 |
tcccttagcttagcacttgtgccacattatattggtaatcatagagaatcttagtttagcaagataatactttgaagatttaatt |
417 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42244034 |
tcacttagcttagcacttgtgccacattatattggtaatcatagagaatcttagtttagcaagataatactttgaagatttaatt |
42243950 |
T |
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