View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_high_1 (Length: 772)
Name: NF16597_high_1
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 414 - 753
Target Start/End: Complemental strand, 28683667 - 28683325
Alignment:
| Q |
414 |
ttacggatgtgcaaacaagcttgctaatcatggccatgatatccaaggctctatgtggtgggcttctttaccttcttttattagagacgacttctcnnnn |
513 |
Q |
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| T |
28683667 |
ttacggatgtgcaaacaagcttgctaatcatggccatgatatccaaggctctatgtggtgggcttctttaccttcttttattagagacgacttctcaata |
28683568 |
T |
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| Q |
514 |
nnnnnnnnnnnnnngatg---tcgcgctctttaannnnnnngctcgtaataattgtatatttctttgtccctttcttctcattttcccatagtatctaaa |
610 |
Q |
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| T |
28683567 |
ataataataataataatgatttcgcgctctttaatttttttgctcgtaataattgtatatttctttgtccctttcttctcattttcccatagtatctaaa |
28683468 |
T |
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| Q |
611 |
gcatgggtcagttgatgttgaaatagctttgtccgaaacaattgtttttggtcatatgcgaaaaaagaaacaagagcatgtcaccttggagaaataagag |
710 |
Q |
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| T |
28683467 |
gcatgggtcagttgatgttaaaatagctttgtccgaaacaattgtttttggtcatatgcggaaaaagaaacaagagcatgtcaccttggagaaataagag |
28683368 |
T |
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| Q |
711 |
aagcttaaaatgggaagaaaaacagtaacattgagaacaacta |
753 |
Q |
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| T |
28683367 |
aagcttaaaatgggaagaaaaacagtaacattgagaacaacta |
28683325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 264 - 392
Target Start/End: Complemental strand, 28683796 - 28683666
Alignment:
| Q |
264 |
aaattcgagatatgcaagaaatgaagttgatcctactttcacgtcctatttgaca--gaaacaaaagcaacaactcaagagagatgcatacagaactcgc |
361 |
Q |
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| T |
28683796 |
aaattcgagatatgcaagaaatgaagttgatcctactttcacgtcctacttgacaaagaaataaaagcaacaactcaagagaaatgcatacagaactcgc |
28683697 |
T |
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| Q |
362 |
ccaaagggtgcaccggcccccactcctcatt |
392 |
Q |
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| T |
28683696 |
tcaaagggtgcaccgccccccactcctcatt |
28683666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 482
Target Start/End: Complemental strand, 33172963 - 33172902
Alignment:
| Q |
421 |
tgtgcaaacaagcttgctaatcatggccatgatatccaaggctctatgtggtgggcttcttt |
482 |
Q |
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| T |
33172963 |
tgtgcagacaagcttgccaatcatagtcacgctatccaaggctctatgtggtcgacttcttt |
33172902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 222 - 396
Target Start/End: Complemental strand, 14114994 - 14114817
Alignment:
| Q |
222 |
atagcaatccattgttacaaaaggaagttgagttgtttatgcaaattcgagatatgcaag-aaatgaagttgatcctactttcacgtcctatttgac--a |
318 |
Q |
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| T |
14114994 |
atagcaatccgttgttacaaaagggagtgaagttatttatgcaaattcgtgatatgaaagaaaatggagctaaacctcctttcacgccttattagacaaa |
14114895 |
T |
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| Q |
319 |
gaaacaaaagcaacaactcaagagagatgcatacagaactcgcccaaagggtgcaccggcccccactcctcattgata |
396 |
Q |
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| T |
14114894 |
gaaacaaaaacaacaactcaagagagatgcatgcaaaagtcgttataagggtgcaccatcccccactcctcaatgata |
14114817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 19900844 - 19900702
Alignment:
| Q |
214 |
tcctccacatagcaatccattgttacaaaaggaagttgagttgtttatgcaaattcgagatatgcaagaaa-tgaagttgatcctactttcacgtcctat |
312 |
Q |
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| T |
19900844 |
tcctccacatagcggttcgttgtcacataaggaagttgagttgttcatgcaaattcgagataagcaagaaaatggagctgaacttcctttcgggccctat |
19900745 |
T |
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| Q |
313 |
ttgaca--gaaacaaaagcaacaactcaagagagatgcataca |
353 |
Q |
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| T |
19900744 |
ttgacaaagaaacagaagcaacaactcaagagagatgcctaca |
19900702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 25781532 - 25781468
Alignment:
| Q |
220 |
acatagcaatccattgttacaaaaggaagttgagttgtttatgcaaattcgagatatgcaagaaa |
284 |
Q |
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| T |
25781532 |
acatagaaatccattgttacagaaggaagtcgagttgcttatgcgaatttgtgatatgcaagaaa |
25781468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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