View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_high_12 (Length: 324)
Name: NF16597_high_12
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 103 - 312
Target Start/End: Original strand, 42615768 - 42615977
Alignment:
| Q |
103 |
ttattattaattaaagtgatactgacaactattctagatgaaatttgaactcggctgcttgaagttttaatatcaaactcttatcatcgaattaacaccc |
202 |
Q |
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| T |
42615768 |
ttattattaattaaagtgatactgacaactattctagatgaaatttgaactcggctgcttgaagttttaatatcaaactcttatcatcgaattaacaccc |
42615867 |
T |
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| Q |
203 |
gataaacgaaaacaacacattcaatggttgaaaacttacataaacaaaaaagaagtaacataccaacaagaccaaacatagatgtaccatatcctcatat |
302 |
Q |
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| T |
42615868 |
gataaacgaaaacaacacattcaatagttgaaaacttacataaacaaaaaagaagtaacataccaacaagaccaaacatagatgtaccatatcctcatat |
42615967 |
T |
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| Q |
303 |
gcaaatagtg |
312 |
Q |
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| T |
42615968 |
gcaaatagtg |
42615977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42615666 - 42615737
Alignment:
| Q |
1 |
ccaattccttttgtctcttacccacatcatgaccctccccttccaagctccaatcacaggaacaatatattt |
72 |
Q |
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| T |
42615666 |
ccaattccttttgtctcttacccacatcatgaccctccccttccaagctccaatcacaggaacaatatattt |
42615737 |
T |
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