View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_high_7 (Length: 402)
Name: NF16597_high_7
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 26282788 - 26282449
Alignment:
| Q |
17 |
actattcaacacatttttataaagatccttgttggaattcttctcttcaagttttctccaataaatcacatctaaaccatcttcatcaacaattaatcct |
116 |
Q |
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| T |
26282788 |
actattcaacacatttttataaagatccttgttggaattcttctcttcaagttttctccaataaatcacatctaaaccatcttcatcaacaattaatcct |
26282689 |
T |
|
| Q |
117 |
ctcacatttccgtcaattctttcaaaaacattccctttaggcacaacaacttgttgcctatctccatcagaagcaatgttatttgtctctcctgatctct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26282688 |
ctcacatttccgtcaattctttcaaaaacattccctttaggcacaacaacttgttgcctatctccatcagaagcaatgttatttatctctcctgatctct |
26282589 |
T |
|
| Q |
217 |
ttctttttcttaaataccttttagctaaaataaagatcaaaccacaaataactatagtgatggctgcagttgcagccacaaactttgctatcttaccacc |
316 |
Q |
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| T |
26282588 |
ttctttttcttaaacaccttttagctaaaataaagatcaaaccacaaataactatagtgatggctgcagttgcagccacaaactttgctatcttaccacc |
26282489 |
T |
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| Q |
317 |
atttgatgaactacttttcgataccgcaattggtccttga |
356 |
Q |
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| T |
26282488 |
atttgatgaactacttttcgataccgcaattggtccttga |
26282449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 15944243 - 15944194
Alignment:
| Q |
60 |
tcttcaagttttctccaataaatcacatctaaaccatcttcatcaacaat |
109 |
Q |
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|||| ||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
15944243 |
tcttgaagctttctccaataaacaacatctaaaccatcttcatcaacaat |
15944194 |
T |
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