View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_low_10 (Length: 377)
Name: NF16597_low_10
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 32400623 - 32400251
Alignment:
| Q |
1 |
caaattgttattcattattgtcatgttgttgggtagggtgcatgtgtgcagaacgtgcttgattctgttatatcatcactcttggaggatccaaatcgca |
100 |
Q |
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| T |
32400623 |
caaattgttattcattattgtcatgttgttgggtagggtgcatgtgtgcagaacgtgcttgattctgttatatcatcactcttggaggatccaaatcgca |
32400524 |
T |
|
| Q |
101 |
agtttatctatgttgaaatggtaatcataatattaatcaaatgctactaaagttttcannnnnnngtaaatggcaagaactagaagtgtttgagtttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32400523 |
agtttatctatgttgaaatggtaatcataatattaatcaaatgctactaaagttttcatttttttgtaaatggcaagaactagaagtgtttgagtttaat |
32400424 |
T |
|
| Q |
201 |
tgggttgtttttattataggcatttttccagagatggtggaggcagcaaagtaaagctaagaaacttaaagtcaaagatcttgtcaactcgggtcagctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32400423 |
tgggttgtttttattataggcatttttccagagatggtggaggcagcaaagtaaagctaagaaacttaaagtcaaagatcttgtcaactcgggtcagctc |
32400324 |
T |
|
| Q |
301 |
gaattcatgtaatctacttactagcttctatatcaatgcttttcaaattcatgcatgtactttaaaattcacc |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32400323 |
gaattcatgtaatctacttactagcttctatatcaatgcttttcaaattcatgcatgtactttaaaactcacc |
32400251 |
T |
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