View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_low_13 (Length: 329)
Name: NF16597_low_13
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 39167414 - 39167117
Alignment:
| Q |
19 |
ctgaccaagatggccacccttttcaatggagtcactaatgtggtgggaatgagcttgagaaatgaactacgaggtcccagacaaaatctcaatgattggt |
118 |
Q |
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| T |
39167414 |
ctgaccaagatggccacccttttcaatggagtcactaatgtggtgggaatgagcttgagaaatgaactacgaggtcccagacaaaatctcaatgattggt |
39167315 |
T |
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| Q |
119 |
acaggtatgttggttttatggttgctctataggcaccttattgttcaaaagattgagtgttattctaaatttgtagaacaatagatgaattaaaacatag |
218 |
Q |
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| T |
39167314 |
acaggtatattggttttatggttgctctataggcaccttattgttcaaaagattgagtgttattctaaatttgtagaacaatagatgaattaaaacatag |
39167215 |
T |
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| Q |
219 |
tcttcatgggaatgagtgattatattgttttgatcttctgaattataggtacatgccaaaaggagcagaagtcgtgcatgctgcgaatccgaatgttc |
316 |
Q |
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| T |
39167214 |
tcttcatgggaatgagtgattatattgttttgatcttctgaattataggtacatgccaaaaggagcagaagtcgtgcatgctgcgaattcgaatgttc |
39167117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 37315152 - 37315049
Alignment:
| Q |
22 |
accaagatggccacccttttcaatggagtcactaatgtggtgggaatgagcttgagaaatgaactacgaggtcccagacaaaatctcaatgattggtaca |
121 |
Q |
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| T |
37315152 |
accaaaatggctactcttttcaatggagtgtctaatgtggttggcatgagcttgaggaatgaacttagaggtccaaaacagaatgtcaatgactggtaca |
37315053 |
T |
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| Q |
122 |
ggta |
125 |
Q |
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| T |
37315052 |
ggta |
37315049 |
T |
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