View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_low_15 (Length: 300)
Name: NF16597_low_15
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 96 - 284
Target Start/End: Complemental strand, 16599887 - 16599705
Alignment:
| Q |
96 |
caaacctctgcctcagacaaaataaattgtatgaagaatctaaatgtagtttaaattttaaaaaataaaatctagatttatgattgttataaatcagtat |
195 |
Q |
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| T |
16599887 |
caaaactctgcctcagacaaaataaattgtatgaagaagataaatttagtttaatttttaaaaaataaaatcttgatttatgattgttataaattagtat |
16599788 |
T |
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| Q |
196 |
ttttatttcatataaaatgcgcatcaatacatttatcaatccaaacgaagnnnnnnncttctcacatgtgtatgggtgaatccaaaaag |
284 |
Q |
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| T |
16599787 |
ttttatttcatataaaatgcacatcactagatttatc------aacgaagaaaaaaacttctcacatgtgtatgggtgaatccaaaaag |
16599705 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 16600099 - 16600015
Alignment:
| Q |
18 |
gagacaatcaaagagcaattcacctctataacaaatattgagaaaacaagaaaaattgaaaaaatccaaacgccatcacaaacct |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16600099 |
gagacaatcaaagagcaattcacctctataacaaatattgagaaaacaagaaaaattgaaaaaatccaaacgccatcacaaacct |
16600015 |
T |
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