View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16597_low_3 (Length: 565)
Name: NF16597_low_3
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Original strand, 35929087 - 35929616
Alignment:
| Q |
19 |
aacataaggagcagaagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929087 |
aacataaggagcagaagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatca |
35929186 |
T |
|
| Q |
119 |
agtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattct |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35929187 |
agtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttcttcatcttattct |
35929286 |
T |
|
| Q |
219 |
caacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929287 |
caacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaaag |
35929386 |
T |
|
| Q |
319 |
aaacaagagaacgatgacactagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtccttgtttccctt |
418 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929387 |
aaacaagagaacgatgacattagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtccttgtttccctt |
35929486 |
T |
|
| Q |
419 |
tttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctctatcttattgttgccgt |
518 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35929487 |
tttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctctaacttattgttgccgt |
35929586 |
T |
|
| Q |
519 |
ttatgcagttgtactgtatcttcatcacag |
548 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
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|
| T |
35929587 |
ttatgcacttgtactgtatcttcatcacag |
35929616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 31 - 543
Target Start/End: Original strand, 35935742 - 35936261
Alignment:
| Q |
31 |
agaagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtt |
130 |
Q |
| |
|
||||||| |||||| |||| ||| |||||||||||||||||||||| |||||||||||||| ||||||| |||| || ||||||||||||||||| | |
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| T |
35935742 |
agaagaaagtgttttcaatgcttctccctcttcccaagaaagagtcttgggaggattctgtgattttctagacagaaaaagctcatcaagtttatcagct |
35935841 |
T |
|
| Q |
131 |
tgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttgg-ttt |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||||| | |||||| |||||||||||||||||||| |||| |||||| |||| || |||| ||| |
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|
| T |
35935842 |
tgactagctttgctataaggaaaaataaccaagagactcaagttgagtaataaacaagcataaagagaaattttcttcatcttgttcttaagttggtttt |
35935941 |
T |
|
| Q |
230 |
ccatatatcttagtttc-tat----ctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttggaggcatgtgaaagaaacaa |
324 |
Q |
| |
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||||| || |||||| ||| ||||||||||||| ||||||||| | | || | | ||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
35935942 |
gtatata-ctaagtttcttatcttactatttatagataaaaaacagtggcaattttgcatgacttgttttgttgttgttgga-gcatgtgaaagaaacaa |
35936039 |
T |
|
| Q |
325 |
gagaacgatgacactagtat-------tgaccaggcaatgatcagccggct-gatttaatatagtttctccttgaatgtaatggattgtccttgtttccc |
416 |
Q |
| |
|
||| ||| ||| || ||| |||||| |||| |||||||||||| | |||||| |||||||| |||||||| ||||||||||| ||||||||| |
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|
| T |
35936040 |
gagtgtgataacattactattgactactgaccatgcaa-gatcagccggctggttttaatttagtttcttcttgaatgcaatggattgtctttgtttccc |
35936138 |
T |
|
| Q |
417 |
tttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctctatcttattgttgcc |
516 |
Q |
| |
|
| ||| |||| |||| |||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||| ||| ||||||| |||||||||| |
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|
| T |
35936139 |
tgtttgtagaatcataacaagttatttaacaatttagcactttgtcattaactttgaaagttaatg----atatactttttcctctaacttattgttgtg |
35936234 |
T |
|
| Q |
517 |
gtttatgcagttgtactgtatcttcat |
543 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
35936235 |
gttgatgcagttgtactgtatcttcat |
35936261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 35911772 - 35912013
Alignment:
| Q |
32 |
gaagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagttt |
131 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |
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|
| T |
35911772 |
gaagaatgtgttttcaatgcatcttcctcttcccatgaaagagtcttaggaggattctgtgaggttctagacagaataaactcaacaagtttatcagctt |
35911871 |
T |
|
| Q |
132 |
gactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttcc |
231 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |
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|
| T |
35911872 |
gactagctttgcaatatggaaaaataaccaatagactcaagttgagtagtaaacaagcataaagagaaaccttcttcatcttgttctcaacttggcttca |
35911971 |
T |
|
| Q |
232 |
atatatc-ttagtttctatctatttatagatacaaaacagtg |
272 |
Q |
| |
|
||||||| | |||||||| |||||||||||| ||||||||| |
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|
| T |
35911972 |
atatatcataagtttctaactatttatagatgaaaaacagtg |
35912013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 33 - 482
Target Start/End: Original strand, 35916160 - 35916641
Alignment:
| Q |
33 |
aagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttg |
132 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
35916160 |
aagaatgtgttttcaatgcatctccctcttcccaagaaagtgtcttaggaggattctgagattttctagacagaataaactcattgagtttatcagcttg |
35916259 |
T |
|
| Q |
133 |
actagctttgctatatggaaaaataaccaaaaaac---tcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggttt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
35916260 |
actagctttgctatatggaaaaataaccaaaagactgatcaaattgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggttt |
35916359 |
T |
|
| Q |
230 |
ccatatatc-ttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgtt---ttgttgtggttggaggcatgtgaaagaaacaag |
325 |
Q |
| |
|
| ||||||| | |||||||| |||||||||||| |||||| ||| | | || ||| ||| || ||||| | ||||||| ||||||||||||||||| |
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|
| T |
35916360 |
caatatatcataagtttctaactatttatagatgaaaaacattgacaattttgaaggacttatttggttgttcttgttggagccatgtgaaagaaacaag |
35916459 |
T |
|
| Q |
326 |
agaacgatgaca-ctagtattga---------------ccaggcaatgatcagccggct-gatttaatatagt---ttctccttgaatgtaat-----gg |
400 |
Q |
| |
|
||| ||| ||| ||| ||||| ||| ||| ||||||||||||| |||||| |||| ||||||||||||||||| || |
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|
| T |
35916460 |
agagagataacatctaccattgaggcattgaccaatgtccatgcattgatcagccggctatgtttaatttagtttcttctccttgaatgtaatgtaaggg |
35916559 |
T |
|
| Q |
401 |
attgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatg |
482 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |
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|
| T |
35916560 |
attgtcattgtttccctttttctagaatcatatcaagttatttaacgttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 35941309 - 35941497
Alignment:
| Q |
48 |
atgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttgactagctttgctata |
147 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
35941309 |
atgcatctccctcttcccaagaaagagtcttgggaggattctgagattttctagacagaataaactcattgagtttatcagcttgactagctttgctata |
35941408 |
T |
|
| Q |
148 |
tggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttccatata |
236 |
Q |
| |
|
||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |
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|
| T |
35941409 |
tggaaaaataaccaataaactcaagttgagtattaaacaagcataaagagaaaccttctccatcttgttctcaacttgatttctatata |
35941497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 35922429 - 35922658
Alignment:
| Q |
33 |
aagaatctgttttagatgcatcttcctcttcccaagaaagagtcttaggaggattctgtgaggttctagaaagaataaactcatcaagtttatcagtttg |
132 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||||| ||| |
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|
| T |
35922429 |
aagaatgtgttttcaatgcatctccctcttcccaagaaagtgtcttgggaggattctgagattttctagacagaataaactcattgagtttatcagcttg |
35922528 |
T |
|
| Q |
133 |
actagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatcttattctcaacttggtttcca |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| | |
|
|
| T |
35922529 |
actagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttcttcatcttgttctcaacttggtttcaa |
35922628 |
T |
|
| Q |
233 |
tatatc-ttagtttctatctatttatagat |
261 |
Q |
| |
|
||||| | |||||||| | |||||||||| |
|
|
| T |
35922629 |
catatcataagtttctaacaatttatagat |
35922658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 389 - 527
Target Start/End: Original strand, 35922772 - 35922909
Alignment:
| Q |
389 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgata |
485 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
35922772 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatg--- |
35922868 |
T |
|
| Q |
486 |
aatatattttgtcctctatcttattgttgccgtttatgcagt |
527 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
35922869 |
-atatatttgttcctctaacttattgttgtggtttatgcagt |
35922909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 35912129 - 35912219
Alignment:
| Q |
394 |
gtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatg |
482 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| ||||| ||| ||||||||||||| ||| |||||| |
|
|
| T |
35912129 |
gtaatggattgttcttgtttccgtttttctagaatcatgtatcaagttatttaacattttagtactatgtgattaactttgaaagttaatg |
35912219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 35941632 - 35941721
Alignment:
| Q |
382 |
ttctccttgaatgtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttt |
471 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35941632 |
ttctccttgaatgtaattgtttt--cttgttttcctttttctagaatcatgtatcaagttatttaacaatttagcactttgtaattaacttt |
35941721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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