View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_low_5 (Length: 480)
Name: NF16597_low_5
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 105 - 309
Target Start/End: Complemental strand, 7885256 - 7885052
Alignment:
| Q |
105 |
aacatgtcaaatgttagtttaagatactttttaaacattccattacacttctattgagagtatatgcttacaggtttatcatgaattcctagttgagccc |
204 |
Q |
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| T |
7885256 |
aacatgtcaaatgttactttaagatactttttaaacattccattacacttctattgagagtatatgcttacaggtttatcatgaattcctagttgagccc |
7885157 |
T |
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| Q |
205 |
aggtgaggtgatcacttctaatagttcttccaaggtgtcatatccacctataagaataggaaaattattgttataaaaactgcaatgagataaaacgtac |
304 |
Q |
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| T |
7885156 |
aggtgaggtgatcacttctaatagttcttccaaggtgtcatatccacctataagaataggaaaattattgttataaaaactgcaatgagataaaacgtac |
7885057 |
T |
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| Q |
305 |
gtttt |
309 |
Q |
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||||| |
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| T |
7885056 |
gtttt |
7885052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 306 - 480
Target Start/End: Complemental strand, 7884892 - 7884718
Alignment:
| Q |
306 |
ttttcttgagttaccatgttagagctacgaagagaaaaaagtaacctagcaaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtg |
405 |
Q |
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| T |
7884892 |
ttttcttgagttaccatgttagagctacgaagagaaaaaagtaacctggcaaggcaataaaagcatcggcctgtcgagccatttcggccttgcgttggtg |
7884793 |
T |
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| Q |
406 |
catgtccgatacagcccgaacttcacctacactctcccctattatctgactcctcgtaatattagtatttactat |
480 |
Q |
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| T |
7884792 |
catgtccgatacagcccgaacttcacctacactctcccctattatctgactcctcgtaatattagtatttactat |
7884718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 7885375 - 7885284
Alignment:
| Q |
19 |
aatgcaattaatccatttttgcatttattaagattttttaatgttaaagaatctagtggcgaaactcacacacaaaaagtgtagagaacatg |
110 |
Q |
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| T |
7885375 |
aatgcaatcaatccattttttcatttattaagattttttaatgttaaagaatctagtggcgaaactcacacacacaaagtgtagagaacatg |
7885284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 53033270 - 53033206
Alignment:
| Q |
356 |
aaggcaataaaagcatcggcttgtcgagccatttcggccttgcattggtgcatgtccgatacagc |
420 |
Q |
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| T |
53033270 |
aaggcaataaatgcatcagcttgtcgagccatttcggctttgcgttggtgcatgtccgatacagc |
53033206 |
T |
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