View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16597_low_7 (Length: 438)

Name: NF16597_low_7
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16597_low_7
NF16597_low_7
[»] chr8 (18 HSPs)
chr8 (198-420)||(9800519-9800740)
chr8 (4-124)||(9800323-9800445)
chr8 (2-106)||(9800047-9800151)
chr8 (2-106)||(17915485-17915588)
chr8 (3-106)||(10047487-10047589)
chr8 (7-106)||(26243378-26243477)
chr8 (2-103)||(10047856-10047957)
chr8 (5-106)||(13315210-13315311)
chr8 (3-106)||(6297470-6297573)
chr8 (3-102)||(16662180-16662279)
chr8 (3-106)||(17914205-17914308)
chr8 (3-106)||(26997848-26997951)
chr8 (1-74)||(12489268-12489341)
chr8 (6-106)||(7344838-7344938)
chr8 (26-106)||(16662473-16662553)
chr8 (3-105)||(6298014-6298116)
chr8 (65-110)||(39234996-39235041)
chr8 (14-106)||(12489517-12489608)
[»] chr4 (16 HSPs)
chr4 (1-103)||(52398691-52398793)
chr4 (3-106)||(7118143-7118246)
chr4 (1-106)||(29691533-29691638)
chr4 (3-103)||(41510079-41510179)
chr4 (3-106)||(3296551-3296654)
chr4 (1-103)||(26168004-26168105)
chr4 (3-103)||(3296923-3297023)
chr4 (3-106)||(29691891-29691994)
chr4 (3-106)||(30608612-30608715)
chr4 (2-89)||(34129019-34129106)
chr4 (3-106)||(34129279-34129382)
chr4 (4-106)||(51906799-51906901)
chr4 (3-104)||(48553906-48554007)
chr4 (11-103)||(38759715-38759807)
chr4 (41-111)||(26984147-26984217)
chr4 (1-89)||(30608270-30608358)
[»] chr2 (16 HSPs)
chr2 (1-106)||(21182315-21182420)
chr2 (3-103)||(32114450-32114550)
chr2 (3-106)||(2191225-2191328)
chr2 (2-104)||(39729584-39729686)
chr2 (3-103)||(3691094-3691194)
chr2 (3-106)||(3691368-3691471)
chr2 (3-106)||(32114174-32114276)
chr2 (2-103)||(2517424-2517525)
chr2 (3-99)||(10706630-10706724)
chr2 (3-95)||(24093535-24093627)
chr2 (3-106)||(21217300-21217403)
chr2 (3-106)||(21264999-21265102)
chr2 (3-106)||(24093164-24093267)
chr2 (5-106)||(32860822-32860923)
chr2 (3-103)||(21216934-21217034)
chr2 (3-103)||(21265368-21265468)
[»] chr5 (14 HSPs)
chr5 (3-106)||(16284282-16284385)
chr5 (2-102)||(8648043-8648143)
chr5 (6-106)||(18999622-18999722)
chr5 (3-106)||(3406839-3406941)
chr5 (8-106)||(1650013-1650110)
chr5 (2-106)||(87239-87343)
chr5 (3-106)||(31588325-31588429)
chr5 (3-106)||(18999374-18999477)
chr5 (38-106)||(22231174-22231242)
chr5 (3-106)||(8750339-8750442)
chr5 (3-106)||(31176515-31176618)
chr5 (1-106)||(13987290-13987396)
chr5 (6-104)||(3406469-3406567)
chr5 (3-97)||(18339090-18339184)
[»] chr6 (10 HSPs)
chr6 (1-106)||(14712983-14713088)
chr6 (1-101)||(21113042-21113142)
chr6 (41-106)||(8710357-8710422)
chr6 (3-106)||(7645961-7646064)
chr6 (41-106)||(5974019-5974084)
chr6 (47-106)||(211449-211508)
chr6 (3-106)||(17157554-17157657)
chr6 (5-106)||(4510196-4510298)
chr6 (41-106)||(211738-211803)
chr6 (45-106)||(17157854-17157915)
[»] chr7 (15 HSPs)
chr7 (1-106)||(22948855-22948960)
chr7 (3-106)||(20544290-20544392)
chr7 (2-102)||(11974676-11974776)
chr7 (3-106)||(44803611-44803714)
chr7 (1-59)||(44803381-44803439)
chr7 (3-103)||(23548986-23549086)
chr7 (2-106)||(32092236-32092340)
chr7 (4-106)||(20543919-20544021)
chr7 (41-106)||(30939581-30939646)
chr7 (6-106)||(28854685-28854785)
chr7 (3-106)||(17075227-17075330)
chr7 (41-106)||(16755650-16755714)
chr7 (5-106)||(18152764-18152865)
chr7 (3-103)||(17075596-17075696)
chr7 (3-111)||(42750097-42750205)
[»] chr3 (12 HSPs)
chr3 (3-103)||(43933451-43933551)
chr3 (3-106)||(13637759-13637862)
chr3 (3-106)||(22814304-22814407)
chr3 (6-105)||(44504368-44504467)
chr3 (4-106)||(43933708-43933809)
chr3 (3-108)||(44504098-44504203)
chr3 (1-106)||(51471343-51471448)
chr3 (2-106)||(25770694-25770798)
chr3 (1-106)||(9218491-9218595)
chr3 (2-58)||(13637531-13637587)
chr3 (3-103)||(37172092-37172192)
chr3 (42-106)||(45728335-45728399)
[»] chr1 (18 HSPs)
chr1 (2-74)||(19895778-19895850)
chr1 (3-106)||(9880769-9880872)
chr1 (3-106)||(18180257-18180360)
chr1 (1-102)||(31436360-31436461)
chr1 (1-106)||(50359416-50359521)
chr1 (3-106)||(5172753-5172856)
chr1 (3-106)||(5683540-5683643)
chr1 (3-106)||(9880492-9880595)
chr1 (1-106)||(18179887-18179992)
chr1 (1-106)||(48154982-48155086)
chr1 (64-106)||(4288475-4288517)
chr1 (1-106)||(6751330-6751436)
chr1 (41-103)||(50359136-50359198)
chr1 (41-106)||(1500998-1501063)
chr1 (41-106)||(37927528-37927593)
chr1 (3-103)||(3591316-3591416)
chr1 (3-106)||(48155258-48155361)
chr1 (2-106)||(19895408-19895512)
[»] scaffold0063 (2 HSPs)
scaffold0063 (4-106)||(35172-35274)
scaffold0063 (1-106)||(34800-34905)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-106)||(108099-108204)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 198 - 420
Target Start/End: Original strand, 9800519 - 9800740
Alignment:
Q  198 gacaacggtatttcatctaataagtacctactcgatcctctagaaagacatttgtagtagtattttgttttggacaattttccttcttttatgaacatag 297  Q
    ||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9800519 gacaaaggtatttcatcta-tatgtacctattcgatcctctagaaagacatttgtagtagcattttgttttggacaattttcctttttttatgaacatag 9800617  T
Q  298 caacttgtcatcataggaaaagaatgagtgtgagagttgcaaatatttctttcttccgtaccatttattattacgtggtaaactcaatgctttgttaatg 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9800618 caacttgtcatcataggaaaagaatgagtgtgagagttgcaaatatatctttcttccgtaccatttattattacgtggtaaactcaatgctttgttaatg 9800717  T
Q  398 tttttggtaagagacaagcaacc 420  Q
    |||||||||||||||||||||||    
T  9800718 tttttggtaagagacaagcaacc 9800740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 9800323 - 9800445
Alignment:
Q  4 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa- 102  Q
    ||||||||||||||| |||||||||| |||| | || ||||| ||||||| |||| ||  ||||||||||| || |||||||||||  |||||| ||||     
T  9800323 actaattttgataacgaagataaaatgtaaggattttaaaaacatttaatgaaatatatggactattcttcaaaggggcgcaaaatgcaaggaccaaaaa 9800422  T
Q  103 -acatttaactagatggagttaa 124  Q
     | ||||||||||| ||||||||    
T  9800423 tatatttaactagagggagttaa 9800445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 9800151 - 9800047
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||  |||| |||| | || | || ||||| |||||||||||| ||| || |||||||| ||  |||||||||| |||||||||||    
T  9800151 agactaattttgataacggagatgaaatgtgaggattttaaaaacatttaataaaatgtaaggattattcttcaaagaggcgcaaaatctaaggactaaa 9800052  T
Q  102 aacat 106  Q
    |||||    
T  9800051 aacat 9800047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 17915485 - 17915588
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||| ||||||||| | || | || ||||| |||||||||||| ||| || |||||||| || | || |||||| |||||||||||    
T  17915485 agactaattttgataacagagataaaatgtgaggatttaaaaaacatttaataaaatgtaagga-tattcttcaaaggagcacaaaatgtaaggactaaa 17915583  T
Q  102 aacat 106  Q
    |||||    
T  17915584 aacat 17915588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 10047589 - 10047487
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | |||| || ||||| ||||||| || | ||  ||||||||||| |||||||||||||| |||||| |||||    
T  10047589 gactaattttgataacggagataaaatgtgagaattttaaaaacatttaatgaa-tgtagggactattcttcaaaagggcgcaaaatgtaaggattaaaa 10047491  T
Q  103 acat 106  Q
    ||||    
T  10047490 acat 10047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 26243378 - 26243477
Alignment:
Q  7 aattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    |||||||||||   ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| || | ||||||||||||||||||||||||||    
T  26243378 aattttgataatggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaaggagcgcaaaatataaggactaaaaacat 26243477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 10047856 - 10047957
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||  ||||||||||| | || || ||||||||||||| | || ||||||||||||||| || | | | ||||| |||||| ||||    
T  10047856 agactaattttgataacggagataaaatatgaaaattttaaaaatatttaatgatatataaagactattcttcaaaggagtggaaaatgtaaggattaaa 10047955  T
Q  102 aa 103  Q
    ||    
T  10047956 aa 10047957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 13315311 - 13315210
Alignment:
Q  5 ctaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 104  Q
    ||||||||||||||| ||||||||| | |  | || ||||| ||||||| |||| ||  ||||||||||  || ||||||||||| ||||||||||||||    
T  13315311 ctaattttgataacagagataaaatgtgatgattttaaaaacatttaatgaaatgtagggactattctttaaatgggcgcaaaatgtaaggactaaaaac 13315212  T
Q  105 at 106  Q
    ||    
T  13315211 at 13315210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 6297573 - 6297470
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||| ||||| | || | || ||||| ||||||| |||| ||   |||||||||| || ||||||||||| |||||||||||     
T  6297573 gactaattttgataacagagagaaaatgtgaggattttaaaaacatttaatgaaatgtaggaactattcttcaaaggggcgcaaaatgtaaggactaaag 6297474  T
Q  103 acat 106  Q
    ||||    
T  6297473 acat 6297470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 16662279 - 16662180
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||| |||||| ||||||||| | |||| || ||||| ||||||| |||| ||  ||||||||||| || | ||||||||| |||| |||||||    
T  16662279 gactaattttaataacagagataaaatgtgagaattttaaaaacatttaatgaaatgtagggactattcttcaaaggagcgcaaaatgtaagaactaaaa 16662180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 17914308 - 17914205
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||||||||| | || | || ||||| |||||||||||| ||  ||||||||||| ||  | |||||||| ||| |||| |||    
T  17914308 gactaattttgataacagagataaaatgtgaggattttaaaaacatttaataaaatgtagggactattcttcaaagagacgcaaaatgtaaagacttaaa 17914209  T
Q  103 acat 106  Q
    ||||    
T  17914208 acat 17914205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 26997848 - 26997951
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | || | || ||||||| ||||| |||| ||  ||||||||||| || || |||||||| |||| |||||||    
T  26997848 gactaattttgataacggagataaaatgtgaggattttaaaaataattaatgaaatgtatggactattcttcaaatggacgcaaaatgtaagaactaaaa 26997947  T
Q  103 acat 106  Q
    ||||    
T  26997948 acat 26997951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 12489341 - 12489268
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttc 74  Q
    |||||||||||||||||||||||||||||   || | || ||||||||||||| |||| ||  |||||||||||    
T  12489341 gagactaattttgataacaaagataaaatgcgaggattttaaaaatatttaatgaaatgtagggactattcttc 12489268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 7344838 - 7344938
Alignment:
Q  6 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 105  Q
    |||||||||||||  | ||||||||| || | || ||||| || ||||||||| ||  || |||||||| || |||| |||||| |||||||||||||||    
T  7344838 taattttgataacggacataaaatatgaggattttaaaaacatataataaaatgtatggattattcttcaaaggggcacaaaatgtaaggactaaaaaca 7344937  T
Q  106 t 106  Q
    |    
T  7344938 t 7344938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 16662473 - 16662553
Alignment:
Q  26 aaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    |||||| |||| || ||||| ||||||| |||| ||   |||||||||| |||| ||||||||| ||||||||||||||||    
T  16662473 aaatatgagaattttaaaaacatttaatgaaatgtaggaactattcttcaaaagagcgcaaaatgtaaggactaaaaacat 16662553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 6298014 - 6298116
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  | ||||||| | || | || ||||| ||||||| |||| ||| ||||||||||| || ||  ||||||| |||| |||||||    
T  6298014 gactaattttgataacggaaataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaagggaagcaaaatgtaagcactaaaa 6298113  T
Q  103 aca 105  Q
    |||    
T  6298114 aca 6298116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 39234996 - 39235041
Alignment:
Q  65 actattcttcgaaagggcgcaaaatataaggactaaaaacatttaa 110  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||    
T  39234996 actattcttcaaaggagcgtaaaatataaggactaaaaacatttaa 39235041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 12489517 - 12489608
Alignment:
Q  14 ataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    |||||| ||||||||| |||| | || ||||| ||| ||| |||| ||| |||||||||||  || | |||||||| ||||||||||||||||    
T  12489517 ataacagagataaaatgtaaggattttaaaaacatt-aatgaaatgtaaggactattcttcataacgacgcaaaatgtaaggactaaaaacat 12489608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 52398793 - 52398691
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    |||||||||||||||||| || |||||||||||||| || ||||||||||||||||||  | |||||||||||| ||  |||||||||| |||||| |||    
T  52398793 gagactaattttgataacgaaaataaaatataagaattttaaaaatatttaataaaatgcagagactattcttcaaagtggcgcaaaatgtaaggaataa 52398694  T
Q  101 aaa 103  Q
    |||    
T  52398693 aaa 52398691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 7118143 - 7118246
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||||||||   ||||||||| | |||| || ||||| ||||||| |||| ||  ||||||||||| || ||||||||||| ||||||||||||    
T  7118143 gactaattttgataatggagataaaatttgagaattttaaaaacatttaatgaaatgtatggactattcttcaaaggggcgcaaaatgtaaggactaaaa 7118242  T
Q  103 acat 106  Q
    ||||    
T  7118243 acat 7118246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29691638 - 29691533
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| || ||  ||||||||||||||||||    
T  29691638 gagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaatggatgcaaaatataaggactaa 29691539  T
Q  101 aaacat 106  Q
    ||||||    
T  29691538 aaacat 29691533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 41510179 - 41510079
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||||||||   ||||||||||| || | || | |||||||||||||||| ||  ||||||||||| || ||||||||||| |||||| |||||    
T  41510179 gactaattttgataagggagataaaatatgaggattttagaaatatttaataaaatgtagggactattcttcaaaggggcgcaaaatgtaaggattaaaa 41510080  T
Q  103 a 103  Q
    |    
T  41510079 a 41510079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 3296654 - 3296551
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  || |||||||| || ||||||||||| ||||||||||||    
T  3296654 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggaatattcttcaaaggggcgcaaaatgtaaggactaaaa 3296555  T
Q  103 acat 106  Q
    ||||    
T  3296554 acat 3296551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26168105 - 26168004
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | || | || ||||||||||||| |||| || | |||||||||  |||||||||||||| ||| ||||||    
T  26168105 gagactaattttgataacggagataaaatgtgaggattttaaaaatatttaat-aaatgtagaaactattctttaaaagggcgcaaaatgtaatgactaa 26168007  T
Q  101 aaa 103  Q
    |||    
T  26168006 aaa 26168004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 3296923 - 3297023
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| |||| | || ||||| ||||||| |||  ||  ||||||||||| || || |||||||| ||||||||||||    
T  3296923 gactaattttgataacggagataaaatgtaaggattttaaaaacatttaatgaaacgtagggactattcttcaaagggtcgcaaaatgtaaggactaaaa 3297022  T
Q  103 a 103  Q
    |    
T  3297023 a 3297023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 29691891 - 29691994
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||||||||| | || | || ||||||||||||| |||| |||| |||||| ||| || | ||| |||||  || ||||||||    
T  29691891 gactaattttgataacagagataaaatgtgaggattttaaaaatatttaatgaaatataaaaactattattcaaaggagcgtaaaatgcaaagactaaaa 29691990  T
Q  103 acat 106  Q
    ||||    
T  29691991 acat 29691994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 30608612 - 30608715
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| ||  ||| |||||| ||||| ||||||    
T  30608612 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaagaggcacaaaatgtaaggtctaaaa 30608711  T
Q  103 acat 106  Q
    ||||    
T  30608712 acat 30608715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 34129106 - 34129019
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaat 89  Q
    ||||||| ||||||||| |||||||||||| |||| || |||||  ||||||||||| ||  ||||||||||| || || ||||||||    
T  34129106 agactaactttgataacgaagataaaatatgagaattttaaaaacgtttaataaaatatagggactattcttcaaagggacgcaaaat 34129019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 34129279 - 34129382
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| ||  || ||||||| ||||| || |||    
T  34129279 gactaattttgataacagagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaattggtgcaaaatgtaagggctgaaa 34129378  T
Q  103 acat 106  Q
    ||||    
T  34129379 acat 34129382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 51906799 - 51906901
Alignment:
Q  4 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 103  Q
    |||||||||||||||  ||||||||| | || | || ||||| ||||||| | || ||  ||||||||||| || | ||||||||| |||||||||||||    
T  51906799 actaattttgataacggagataaaatgtgaggattttaaaaacatttaatgagatgtagggactattcttcaaaggagcgcaaaatgtaaggactaaaaa 51906898  T
Q  104 cat 106  Q
    |||    
T  51906899 cat 51906901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 48554007 - 48553906
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | || | || |||||  |||||| |||| ||  ||||||||||| || || |||||||| ||||||||||||    
T  48554007 gactaattttgataacggagataaaatgtgaggattttaaaaaggtttaatgaaatgtatggactattcttcaaagggacgcaaaatgtaaggactaaaa 48553908  T
Q  103 ac 104  Q
    ||    
T  48553907 ac 48553906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 38759807 - 38759715
Alignment:
Q  11 ttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 103  Q
    ||||||||  ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| ||  |||||||||| |||||||||||||    
T  38759807 ttgataacggagataaaatttgaggattttaaaaacatttaatgaaatgtatagactattcttcaaagaggcgcaaaatttaaggactaaaaa 38759715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 26984217 - 26984147
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacatttaac 111  Q
    ||||| |||||||||| | ||  ||||||||||| ||  ||||||||||||||  ||||||||||||||||    
T  26984217 aaaaacatttaataaagtctagggactattcttcaaagaggcgcaaaatataaaaactaaaaacatttaac 26984147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30608358 - 30608270
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaat 89  Q
    ||||||||||||||||||  ||||||||| | || | || |||||||| |||| |||| ||  ||||||||||| ||| | ||||||||    
T  30608358 gagactaattttgataacggagataaaatgtgaggattttaaaaatatataatgaaatgtagggactattcttcaaaatgacgcaaaat 30608270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 21182420 - 21182315
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||| ||||||||| | | || || ||||| ||||||| |||| ||| ||||||||||| || ||||||||||| ||||||||||    
T  21182420 gagactaattttgataacagagataaaatgtgaaaattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggcgcaaaatgtaaggactaa 21182321  T
Q  101 aaacat 106  Q
    ||||||    
T  21182320 aaacat 21182315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 32114450 - 32114550
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||||||| | | |||| || ||||||||||||| |||| ||| |||||||||| |||  |||||||||| ||||||||||||    
T  32114450 gactaattttgataacagagataaagtgtgagaattttaaaaatatttaatgaaatgtaaggactattctttgaagaggcgcaaaatgtaaggactaaaa 32114549  T
Q  103 a 103  Q
    |    
T  32114550 a 32114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 2191328 - 2191225
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||| ||||||||||| || ||||||||||| ||||||||||||    
T  2191328 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggcgcaaaatgtaaggactaaaa 2191229  T
Q  103 acat 106  Q
    ||||    
T  2191228 acat 2191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 39729584 - 39729686
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||| ||||||  ||||||||| | || | || ||||||||||||| |||| ||||||||||||||| ||  | ||||||||||||||||||||    
T  39729584 agactaatttcgataacggagataaaatgtgaggattttaaaaatatttaatgaaatataaagactattcttcaaactgacgcaaaatataaggactaaa 39729683  T
Q  102 aac 104  Q
    |||    
T  39729684 aac 39729686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 3691194 - 3691094
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||   |||||||| | || | || ||||| ||||||| |||| ||   |||||||||| |||||||||||||||||||||||||||    
T  3691194 gactaattttgataacggtgataaaatgtgaggattttaaaaacatttaatgaaatgtaggaactattcttcaaaagggcgcaaaatataaggactaaaa 3691095  T
Q  103 a 103  Q
    |    
T  3691094 a 3691094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 3691368 - 3691471
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | |  | || ||||| ||||||| |||| ||  ||||||||||| || |||||||||||| |||||||||||    
T  3691368 gactaattttgataacggagataaaatgtgaagattttaaaaacatttaatgaaatgtagggactattcttcaaaggggcgcaaaatacaaggactaaaa 3691467  T
Q  103 acat 106  Q
    ||||    
T  3691468 acat 3691471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 32114276 - 32114174
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||||||| || ||||||||| | || | || ||||| |||||||| | | ||  ||||||||||| |||||||| ||||| ||||||||||||    
T  32114276 gactaattttgatatcagagataaaatgtgaggattttaaaaacatttaatagattgtagggactattcttc-aaagggcgtaaaatgtaaggactaaaa 32114178  T
Q  103 acat 106  Q
    ||||    
T  32114177 acat 32114174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 2517525 - 2517424
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  | |||||||| |||||||||||    
T  2517525 agactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagagacgcaaaatgtaaggactaaa 2517426  T
Q  102 aa 103  Q
    ||    
T  2517425 aa 2517424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 10706630 - 10706724
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggacta 99  Q
    ||||| ||||||||||  ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || ||||||||||| |||||||||    
T  10706630 gactagttttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatata--gactattcttcaaaggggcgcaaaatgtaaggacta 10706724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 24093535 - 24093627
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagg 95  Q
    ||||||||||||||||  ||||||||| |||| | || ||||| |||||||||||| ||   |||||||||| || ||| ||||||| |||||    
T  24093535 gactaattttgataacggagataaaatgtaaggattttaaaaacatttaataaaatataggcactattcttcaaatgggtgcaaaatgtaagg 24093627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 21217300 - 21217403
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||| ||||   |||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  21217300 gactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagcggcgcaaaatgtaaggactaaaa 21217399  T
Q  103 acat 106  Q
    ||||    
T  21217400 acat 21217403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 21265102 - 21264999
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||| ||||   |||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  21265102 gactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagcggcgcaaaatgtaaggactaaaa 21265003  T
Q  103 acat 106  Q
    ||||    
T  21265002 acat 21264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 24093267 - 24093164
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||| ||||||||||| |||| || || | || | || ||||| ||||||| |||| ||  ||||||||||| || ||||||||| | ||||||||||||    
T  24093267 gactgattttgataacgaagagaagatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaaggggcgcaaagtgtaaggactaaaa 24093168  T
Q  103 acat 106  Q
    ||||    
T  24093167 acat 24093164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 32860923 - 32860822
Alignment:
Q  5 ctaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 104  Q
    ||||||||||| ||  ||||||||| | || | || ||||| ||||||| |||| ||| ||||||| ||| || || |||||||||||| | ||||||||    
T  32860923 ctaattttgatcacggagataaaatgttaggattttaaaaacatttaatgaaatataacgactatttttcaaagggacgcaaaatataaaggctaaaaac 32860824  T
Q  105 at 106  Q
    ||    
T  32860823 at 32860822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 21217034 - 21216934
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||    ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  21217034 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 21216935  T
Q  103 a 103  Q
    |    
T  21216934 a 21216934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 21265368 - 21265468
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||    ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  21265368 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 21265467  T
Q  103 a 103  Q
    |    
T  21265468 a 21265468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 16284385 - 16284282
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||||| || | || ||||| |||||||||||| ||||||||||||||| |||   |||||||| ||||||||||||    
T  16284385 gactaattttgataacggagataaaatatgaggattttaaaaacatttaataaaatataaagactattcttcaaaaaaacgcaaaatgtaaggactaaaa 16284286  T
Q  103 acat 106  Q
    ||||    
T  16284285 acat 16284282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 8648043 - 8648143
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||  ||| ||||| | || | || ||||||||||||| |||| ||||||||||||||| ||||| |||||||| |||||||||||    
T  8648043 agactaattttgataacggagaaaaaatgtgaggattttaaaaatatttaatgaaatgtaaagactattcttccaaaggacgcaaaatgtaaggactaaa 8648142  T
Q  102 a 102  Q
    |    
T  8648143 a 8648143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 18999622 - 18999722
Alignment:
Q  6 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 105  Q
    |||||||||||||||||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| ||| |  ||||||| |||||||||||||||    
T  18999622 taattttgataacaaagataaaatgtgaggattttaaaaatatttaatgaaatgtatggactattcttcaaaatgaagcaaaatgtaaggactaaaaaca 18999721  T
Q  106 t 106  Q
    |    
T  18999722 t 18999722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 3406839 - 3406941
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||||||||| | |||| || |||||||||||||||||| |    |||||||||| ||| ||||||||||||||  |||||||    
T  3406839 gactaattttgataacagagataaaatgtgagaattttaaaaatatttaataaaatattggaactattcttcaaaaaggcgcaaaatataa-aactaaaa 3406937  T
Q  103 acat 106  Q
    ||||    
T  3406938 acat 3406941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 1650110 - 1650013
Alignment:
Q  8 attttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    |||||||||||  |||||||||||||||| || ||||| |||||||||||| || | | |||||||| ||| ||||||||||||||  |||||||||||    
T  1650110 attttgataacggagataaaatataagaattttaaaaacatttaataaaatgtagataatattcttc-aaatggcgcaaaatataaatactaaaaacat 1650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 87239 - 87343
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| || || | ||||||||||||||||||    
T  87239 agactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagggacacaaaatataaggactaaa 87338  T
Q  102 aacat 106  Q
    |||||    
T  87339 aacat 87343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 31588325 - 31588429
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaaggg-cgcaaaatataaggactaaa 101  Q
    ||||||||||||||||  ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || ||| |||||||| |||||||||||    
T  31588325 gactaattttgataacggagataaaatgttaggattttaaaaatatttaatgaaatgtagggactattcttcaaaggggacgcaaaatgtaaggactaaa 31588424  T
Q  102 aacat 106  Q
    |||||    
T  31588425 aacat 31588429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 18999477 - 18999374
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  |||||||||   || | || ||||||||||||| |||| ||  ||||||||||| |||| | ||||||| ||||||||||||    
T  18999477 gactaattttgataacggagataaaatgagaggattttaaaaatatttaatgaaatgtatggactattcttcaaaagagtgcaaaatgtaaggactaaaa 18999378  T
Q  103 acat 106  Q
    ||||    
T  18999377 acat 18999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 22231174 - 22231242
Alignment:
Q  38 ttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    |||||||| ||||||| |||| ||  ||||||||||  || ||||||||||||||||||||||||||||    
T  22231174 ttcaaaaacatttaatgaaatatagggactattctttaaaggggcgcaaaatataaggactaaaaacat 22231242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 8750339 - 8750442
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||||| || | || ||| | |||||||||||| ||  ||||||||||| ||    |||||||| ||||||||||||    
T  8750339 gactaattttgataacggagataaaatatgaggattttaaacacatttaataaaatgtagggactattcttcaaagaaacgcaaaatgtaaggactaaaa 8750438  T
Q  103 acat 106  Q
    ||||    
T  8750439 acat 8750442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 31176618 - 31176515
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||   |||||||||| |  | || ||||| ||||||| |||| ||  |||| |||||| || || |||||||||||||||||||||    
T  31176618 gactaattttgataacggggataaaatatgacgattttaaaaacatttaatgaaatgtatggactgttcttcaaagggacgcaaaatataaggactaaaa 31176519  T
Q  103 acat 106  Q
    ||||    
T  31176518 acat 31176515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 13987396 - 13987290
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaat-atttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggacta 99  Q
    |||||||||||| |||||  ||||||||| | |||| || |||||  ||||||| |||| || ||| |||||||| ||||||||| |||| |||| ||||    
T  13987396 gagactaattttaataacggagataaaatgtgagaattttaaaaaacatttaatgaaatatagagattattcttcaaaagggcgcgaaatgtaagaacta 13987297  T
Q  100 aaaacat 106  Q
    |||||||    
T  13987296 aaaacat 13987290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 3406567 - 3406469
Alignment:
Q  6 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 104  Q
    |||||||||||||| |||||||||||||| | || ||||| ||||||| |||| ||   ||||||||||| |  | ||||| || |||||| |||||||    
T  3406567 taattttgataacagagataaaatataaggattttaaaaacatttaatgaaatatatgaactattcttcgtagagacgcaatatttaaggattaaaaac 3406469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 18339184 - 18339090
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggac 97  Q
    ||||||||||||| |   ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| || ||||||||||| |||||||    
T  18339184 gactaattttgatgatggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaaggggcgcaaaatgtaaggac 18339090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 14712983 - 14713088
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||| ||||||||||| || | ||| |||| ||||||| |||| ||| ||||||||||| |||| ||||||||| |||| | |||    
T  14712983 gagactaattttgataacagagataaaatatgagcatttctaaaacatttaatgaaatgtaaggactattcttcaaaagagcgcaaaatgtaagaattaa 14713082  T
Q  101 aaacat 106  Q
    ||||||    
T  14713083 aaacat 14713088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 21113142 - 21113042
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    |||||||||||||||||   ||||||||| | |||| || ||||| ||||||| |||| || |||||||||||| | |||||||||||| ||||||||||    
T  21113142 gagactaattttgataaaggagataaaatgtgagaattttaaaaacatttaatgaaatgtagagactattcttcaatagggcgcaaaatgtaaggactaa 21113043  T
Q  101 a 101  Q
    |    
T  21113042 a 21113042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 8710357 - 8710422
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||| ||||||| |||| ||| ||||||||||| || ||| ||||||||||||||||||||||||    
T  8710357 aaaaacatttaatgaaatgtaaggactattcttcaaaggggtgcaaaatataaggactaaaaacat 8710422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 7645961 - 7646064
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | |||| ||  |||| ||||| | |||| ||| ||||||||||| || | || |||||| ||||||||||||    
T  7645961 gactaattttgataacggagataaaatgtgagaatttttaaaacatttattgaaatgtaaggactattcttcaaaggagcacaaaatgtaaggactaaaa 7646060  T
Q  103 acat 106  Q
    ||||    
T  7646061 acat 7646064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 5974084 - 5974019
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||| ||||||| |||| ||  ||||||||||| || ||| ||||||||||||||||||||||||    
T  5974084 aaaaacatttaatgaaatgtagggactattcttcaaaggggtgcaaaatataaggactaaaaacat 5974019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 211508 - 211449
Alignment:
Q  47 atttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||||| |||| ||  ||||||||||| || ||||||||||| ||||||||||||||||    
T  211508 atttaatgaaatgtacggactattcttcaaaggggcgcaaaatgtaaggactaaaaacat 211449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 17157657 - 17157554
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||| | ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| |   |||| ||||| |||| |||||||    
T  17157657 gactaattttgataatagagataaaatgtgaggattttaaaaatatttaatgaaatgtatggactattcttcaatgaggcgtaaaatgtaagaactaaaa 17157558  T
Q  103 acat 106  Q
    ||||    
T  17157557 acat 17157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 4510298 - 4510196
Alignment:
Q  5 ctaattttgataacaaagataaaatata-agaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 103  Q
    ||||||||||||||  |||||||||||  || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||| ||||| |||||||||||||    
T  4510298 ctaattttgataaccgagataaaatatggaggattttaaaaacatttaatgaaatgtagggactattcttcaaataggcgtaaaatgtaaggactaaaaa 4510199  T
Q  104 cat 106  Q
    |||    
T  4510198 cat 4510196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 211738 - 211803
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||||||||||| |||| ||  ||||||||||| ||  |||||||||| |||||| |||||||||    
T  211738 aaaaatatttaatgaaatgtagggactattcttcaaataggcgcaaaatgtaaggattaaaaacat 211803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 17157854 - 17157915
Alignment:
Q  45 atatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||||||    
T  17157854 atatttaatgaaatgtagggactattcttcaaagtggcgcaaaatgtaaggactaaaaacat 17157915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 22948855 - 22948960
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| || || |||||||| ||||||||||    
T  22948855 gagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagagactattcttcaaagggtcgcaaaatgtaaggactaa 22948954  T
Q  101 aaacat 106  Q
    ||||||    
T  22948955 aaacat 22948960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 20544290 - 20544392
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||| ||||||||||| |||||||||| | |||  || ||||| ||||||| |||| ||| ||||||||||| ||| || ||||||||||||||||||||    
T  20544290 gactgattttgataacgaagataaaatgtgagatttt-aaaaacatttaatgaaatgtaaggactattcttcaaaaaggtgcaaaatataaggactaaaa 20544388  T
Q  103 acat 106  Q
    ||||    
T  20544389 acat 20544392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 11974776 - 11974676
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    ||||||||||||||||| |||||||||| | || | || ||||| ||||||| |||| || |||||||| ||| || | ||||||||| |||||||||||    
T  11974776 agactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtacagactatttttcaaaggagcgcaaaatgtaaggactaaa 11974677  T
Q  102 a 102  Q
    |    
T  11974676 a 11974676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 44803611 - 44803714
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | |||| || ||||| ||||||| |||| || |||||||||||  ||   ||||||||| ||||||||||||    
T  44803611 gactaattttgataacggagataaaatgtgagaattttaaaaacatttaatgaaatgtagagactattctttaaagaagcgcaaaatgtaaggactaaaa 44803710  T
Q  103 acat 106  Q
    ||||    
T  44803711 acat 44803714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44803439 - 44803381
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatt 59  Q
    |||||||||||||||| || |||||||||||||| | || |||||||||||||||||||    
T  44803439 gagactaattttgatagcagagataaaatataaggattttaaaaatatttaataaaatt 44803381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 23548986 - 23549086
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  | ||||||| | || | |||||||| ||||||| |||| || ||| |||||||| |||||||||||||| |||| | |||||    
T  23548986 gactaattttgataacggaaataaaatttgaggatttcaaaaagatttaatgaaatatagagagtattcttcaaaagggcgcaaaatgtaagaaataaaa 23549085  T
Q  103 a 103  Q
    |    
T  23549086 a 23549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 32092340 - 32092236
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||||| | ||||| | || | || ||||| ||||||| ||||  |  ||||||||||| ||  |||||||||| |||||||||||    
T  32092340 agactaattttgataacaaacacaaaatgtgaggattttaaaaacatttaatgaaatgcagggactattcttcaaagaggcgcaaaatgtaaggactaaa 32092241  T
Q  102 aacat 106  Q
    |||||    
T  32092240 aacat 32092236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 20544021 - 20543919
Alignment:
Q  4 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 103  Q
    |||||||||||||||  ||||||||||| || | || ||||| ||||||| |||| ||  ||||||||||| || |||| |||||| |||| | ||||||    
T  20544021 actaattttgataacggagataaaatatgaggattttaaaaaaatttaatgaaatgtagggactattcttcaaaggggcacaaaatgtaagaattaaaaa 20543922  T
Q  104 cat 106  Q
    |||    
T  20543921 cat 20543919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 30939581 - 30939646
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||||||||||| |||| ||  ||||||||||||||| |||| ||||| || |||||||||||||    
T  30939581 aaaaatatttaatgaaatgtagggactattcttcgaaatggcgtaaaatgtagggactaaaaacat 30939646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 28854785 - 28854685
Alignment:
Q  6 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 105  Q
    |||||||||||||  | ||||||| | || | || ||||| |||||||||||| ||  || |||||||  || |||||||||||||||||| ||||||||    
T  28854785 taattttgataactgaaataaaatgtgaggattttaaaaacatttaataaaatgtagggagtattctttaaatgggcgcaaaatataaggattaaaaaca 28854686  T
Q  106 t 106  Q
    |    
T  28854685 t 28854685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 17075330 - 17075227
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||| ||||   |||||||| | || | || |||||  |||||| |||| ||  ||||||||||| ||  |||||||||||||||||||||||    
T  17075330 gactaattttgttaacggggataaaatgtgaggattttaaaaacttttaatgaaatgtagggactattcttcaaagcggcgcaaaatataaggactaaaa 17075231  T
Q  103 acat 106  Q
    ||||    
T  17075230 acat 17075227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 16755650 - 16755714
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||||||||||| |||| || |||||||||||| ||  |||||||||||| |||| |||||||||    
T  16755650 aaaaatatttaatgaaatatagagactattcttcaaagtggcgcaaaatat-aggattaaaaacat 16755714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 18152865 - 18152764
Alignment:
Q  5 ctaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 104  Q
    ||||||||||||||  ||||||||| | || | || || || |||||| ||||| ||  ||||||||||| || ||||||||||| |||| ||| |||||    
T  18152865 ctaattttgataacggagataaaatgtgaggattttaagaacatttaacaaaatgtagggactattcttcaaaggggcgcaaaatgtaagaactgaaaac 18152766  T
Q  105 at 106  Q
    ||    
T  18152765 at 18152764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 17075596 - 17075696
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||    ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  17075596 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 17075695  T
Q  103 a 103  Q
    |    
T  17075696 a 17075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 42750097 - 42750205
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||| |||||  ||||||||| | || | || |||||  |||||| |||| ||  ||||||||||| || ||||| ||||| ||| ||||||||    
T  42750097 gactaattttaataacggagataaaatgtgaggattttaaaaacgtttaatgaaatgtagggactattcttcaaaggggcgtaaaatgtaaagactaaaa 42750196  T
Q  103 acatttaac 111  Q
    | |||||||    
T  42750197 atatttaac 42750205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 43933551 - 43933451
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||||||||| |||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || |||| |||||| ||||||||||||    
T  43933551 gactaattttgataacgaagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaacgggcacaaaatgtaaggactaaaa 43933452  T
Q  103 a 103  Q
    |    
T  43933451 a 43933451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 13637759 - 13637862
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||| ||||||||||  ||||||||| | || | || ||||||||||||| |||| || |||||||||||| || ||||||||||| ||||||||| ||    
T  13637759 gactagttttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatgtagagactattcttcaaaggggcgcaaaatgtaaggactagaa 13637858  T
Q  103 acat 106  Q
    ||||    
T  13637859 acat 13637862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 22814407 - 22814304
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||||||||| |||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| || ||||||||||| |||| | |||||    
T  22814407 gactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtatggactattcttcaaaggggcgcaaaatgtaagaattaaaa 22814308  T
Q  103 acat 106  Q
    ||||    
T  22814307 acat 22814304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 44504368 - 44504467
Alignment:
Q  6 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 105  Q
    |||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||| ||||||||||| || ||| ||||||| |||||||||||||||    
T  44504368 taattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggtgcaaaatgtaaggactaaaaaca 44504467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 43933708 - 43933809
Alignment:
Q  4 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 103  Q
    |||||||||||||||| ||||||||||| || | || ||||| ||||||| |||  || |||||||| ||| || || |||||||| | |||||||||||    
T  43933708 actaattttgataacagagataaaatatgaggattttaaaaacatttaatgaaa-gtagagactatttttcaaatggacgcaaaatgtgaggactaaaaa 43933806  T
Q  104 cat 106  Q
    |||    
T  43933807 cat 43933809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 44504203 - 44504098
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || || | |||||| |||| ||||||     
T  44504203 gactaattttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaatggacacaaaatgtaagaactaaag 44504104  T
Q  103 acattt 108  Q
    ||||||    
T  44504103 acattt 44504098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 51471448 - 51471343
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| || | |||||||||| || || |||||||| |||| |||||    
T  51471448 gagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagaaactattcttcaaagggacgcaaaatgtaagaactaa 51471349  T
Q  101 aaacat 106  Q
     |||||    
T  51471348 gaacat 51471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 25770694 - 25770798
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    ||||||||||| |||||  |||||||||||||  | || ||||| |||||||||||| ||   |||||||||| || | | ||||||| |||||| ||||    
T  25770694 agactaatttttataacggagataaaatataaatattttaaaaacatttaataaaatgtaggaactattcttcaaatgagtgcaaaatgtaaggattaaa 25770793  T
Q  102 aacat 106  Q
    |||||    
T  25770794 aacat 25770798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9218491 - 9218595
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||| |||||| |||||||||| | |  | || ||||| ||||||| |||| ||  ||||||||||| || | ||||||||| ||| ||||||    
T  9218491 gagactaattt-gataacgaagataaaatgtgatgattttaaaaacatttaatgaaatatagggactattcttcaaaggagcgcaaaatgtaatgactaa 9218589  T
Q  101 aaacat 106  Q
    ||||||    
T  9218590 aaacat 9218595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 13637587 - 13637531
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaat 58  Q
    ||||||||||||||||| |||||||||||| |  | || ||||||||||||| ||||    
T  13637587 agactaattttgataacgaagataaaatatgaagattttaaaaatatttaatgaaat 13637531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 37172192 - 37172092
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||| | | || | || ||||| ||||||| |||| || |||||||||||  ||   ||||||||| ||||||||||||    
T  37172192 gactaattttgataacggagataaactgtgaggattttaaaaacatttaatgaaatgtagagactattctttaaataagcgcaaaatgtaaggactaaaa 37172093  T
Q  103 a 103  Q
    |    
T  37172092 a 37172092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 45728335 - 45728399
Alignment:
Q  42 aaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    |||||||||||| |||| ||  ||||||||||| || || | |||||| ||||||||||||||||    
T  45728335 aaaatatttaatgaaatgtatggactattcttcaaagggacacaaaatgtaaggactaaaaacat 45728399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 19895778 - 19895850
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttc 74  Q
    ||||||||||||||||| |||||||||||| |||| || ||||| |||||||||||| || ||||||||||||    
T  19895778 agactaattttgataacgaagataaaatatgagaattttaaaaacatttaataaaatgtagagactattcttc 19895850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 9880769 - 9880872
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||||||||| | |||| || ||||| |||||||||||| || | |||||||||| || | ||||||||| |||| | |||||    
T  9880769 gactaattttgataacagagataaaatgtgagaattttaaaaacatttaataaaatatagaaactattcttcaaatgagcgcaaaatgtaagaattaaaa 9880868  T
Q  103 acat 106  Q
    ||||    
T  9880869 acat 9880872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 18180257 - 18180360
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||  ||||||||||| || | || ||||| |||||||||||| ||  ||||||||||| ||  |||||||||||||| || |||||    
T  18180257 gactaattttgataacggagataaaatatgaggattttaaaaacatttaataaaatgtatggactattcttcaaagtggcgcaaaatataaagattaaaa 18180356  T
Q  103 acat 106  Q
    ||||    
T  18180357 acat 18180360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 31436360 - 31436461
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | | || || ||||| |||||||||||| ||  ||||||||||| ||||| | |||||| ||||||||||    
T  31436360 gagactaattttgataacggagataaaatgtgataattttaaaaacatttaataaaatatagtgactattcttcaaaaggacacaaaatgtaaggactaa 31436459  T
Q  101 aa 102  Q
    ||    
T  31436460 aa 31436461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 50359416 - 50359521
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||| ||||||||| | || | || ||||| ||||||| ||||  || ||||||||||| || ||||||||||| |||||| ||     
T  50359416 gagactaattttgataacagagataaaatgtgaggattttaaaaacatttaatgaaataaaaggactattcttcaaatgggcgcaaaatgtaaggaatat 50359515  T
Q  101 aaacat 106  Q
    ||||||    
T  50359516 aaacat 50359521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 5172856 - 5172753
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||| |||||||||  ||||||||| |||| | || ||||| ||||||| |||| || |||||||||||| || | ||||||||| |||| |||||||    
T  5172856 gactaaatttgataacgtagataaaatgtaaggattttaaaaacatttaatgaaatgtagagactattcttcaaatgagcgcaaaatgtaagaactaaaa 5172757  T
Q  103 acat 106  Q
    ||||    
T  5172756 acat 5172753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 5683540 - 5683643
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||||||| |  ||||||||||  || | || ||||||||||||| |||| ||  ||||||||||| ||| | || ||||||||||||||||||    
T  5683540 gactaattttgataccggagataaaatacgaggattttaaaaatatttaatgaaatgtagggactattcttcaaaaagacgtaaaatataaggactaaaa 5683639  T
Q  103 acat 106  Q
    ||||    
T  5683640 acat 5683643  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 9880595 - 9880492
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||||||||| |||||||||| | || | || ||||| ||||||| |||| || ||||| |||||| || ||  ||||||| ||||||||||||    
T  9880595 gactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtagagacttttcttcaaagggatgcaaaatgtaaggactaaaa 9880496  T
Q  103 acat 106  Q
    ||||    
T  9880495 acat 9880492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 18179992 - 18179887
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | || | || ||||| | ||||| |||| ||| ||||||| ||| || ||| ||||||| ||||||||||    
T  18179992 gagactaattttgataacggagataaaatgtgaggattttaaaaacaattaatgaaatataaggactatttttcaaaggggtgcaaaatgtaaggactaa 18179893  T
Q  101 aaacat 106  Q
    ||||||    
T  18179892 aaacat 18179887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 48155086 - 48154982
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaag-ggcgcaaaatataaggacta 99  Q
    |||| ||||||||||| |  ||||||||||| || | || ||||| |||||||||||| ||| ||||||||||  |||| |||| |||||||||||| ||    
T  48155086 gagattaattttgatatcggagataaaatatgaggattttaaaaacatttaataaaatgtaaggactattctt--aaagcggcgtaaaatataaggatta 48154989  T
Q  100 aaaacat 106  Q
    |||||||    
T  48154988 aaaacat 48154982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 4288475 - 4288517
Alignment:
Q  64 gactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  4288475 gactattcttcaaaggggcgcaaaatataaggactaaaaacat 4288517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 6751330 - 6751436
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcg-caaaatataaggacta 99  Q
    ||||||||||||||||||||||||||||| | || | || ||||| ||||||| |||| ||| |||| |||||  || || || |||||| ||| |||||    
T  6751330 gagactaattttgataacaaagataaaatgtgaggattttaaaaaaatttaatgaaatgtaaggacttttctttaaagggacgccaaaatgtaatgacta 6751429  T
Q  100 aaaacat 106  Q
    |||||||    
T  6751430 aaaacat 6751436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 50359198 - 50359136
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 103  Q
    ||||| ||||||| |||| ||  ||||||||||||||  ||||||||||||||||||||||||    
T  50359198 aaaaacatttaatgaaatgtagggactattcttcgaattggcgcaaaatataaggactaaaaa 50359136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 1500998 - 1501063
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||| ||||||| |||| ||  ||||||||||| |||| |||||||||||| |||||||||||||    
T  1500998 aaaaacatttaatgaaatgtagggactattcttcaaaagagcgcaaaatatagggactaaaaacat 1501063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 37927593 - 37927528
Alignment:
Q  41 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 106  Q
    ||||||||||||| |||| || |||||||||||| | || ||| ||||||||| ||||||||||||    
T  37927593 aaaaatatttaatcaaatgtagagactattcttcaatagagcgtaaaatataaagactaaaaacat 37927528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 3591316 - 3591416
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    |||||||||| ||||   ||||||||| | || | || ||||| |||||||||||| ||  ||||||||||| || | ||||||||| ||||||||||||    
T  3591316 gactaatttttataatggagataaaatgtgaggattttaaaaacatttaataaaatgtatggactattcttcaaatgagcgcaaaatgtaaggactaaaa 3591415  T
Q  103 a 103  Q
    |    
T  3591416 a 3591416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 48155258 - 48155361
Alignment:
Q  3 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 102  Q
    ||||||||||||||||| ||||||||| | |  | || ||||| ||||||| |||| ||   || ||||||| || | |||||||||||||||| |||||    
T  48155258 gactaattttgataacatagataaaatgtgaagattttaaaaacatttaatgaaatataggaacaattcttcaaaggagcgcaaaatataaggattaaaa 48155357  T
Q  103 acat 106  Q
    ||||    
T  48155358 acat 48155361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 19895512 - 19895408
Alignment:
Q  2 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 101  Q
    |||||||||||||||||  ||||||||| | ||   || ||||| ||||||| |||| ||  ||||||||||| || | ||  ||||| |||||||||||    
T  19895512 agactaattttgataacggagataaaatgtgagggttttaaaaacatttaattaaatgtatggactattcttcaaacgagcataaaatgtaaggactaaa 19895413  T
Q  102 aacat 106  Q
    |||||    
T  19895412 aacat 19895408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 35172 - 35274
Alignment:
Q  4 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 103  Q
    ||||||||| |||||  ||||||||| | || | || ||||| ||| |||||||| || |||||||||||| || || |||||||| |||||||||||||    
T  35172 actaattttcataaccgagataaaatgtgaggattttaaaaacattcaataaaatgtagagactattcttcaaagggacgcaaaatgtaaggactaaaaa 35271  T
Q  104 cat 106  Q
    |||    
T  35272 cat 35274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 34905 - 34800
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | || |||| ||||| ||||||| |||| ||  ||| ||| ||| ||  | |||||||||||||||||||    
T  34905 gagactaattttgataacggagataaaatgtgagtactttaaaaacatttaatgaaatgtatggaccattattcaaatagacgcaaaatataaggactaa 34806  T
Q  101 aaacat 106  Q
    ||||||    
T  34805 aaacat 34800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 108099 - 108204
Alignment:
Q  1 gagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaa 100  Q
    ||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||   |  ||||||| |||||||||||||| ||||||||||    
T  108099 gagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaggaataattcttcaaaagggcgcaaaatgtaaggactaa 108198  T
Q  101 aaacat 106  Q
    ||||||    
T  108199 aaacat 108204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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