View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16597_low_8 (Length: 406)
Name: NF16597_low_8
Description: NF16597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16597_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 34858225 - 34857849
Alignment:
| Q |
16 |
gaaacaatttaaacttatcccataccttttcgatttctatccaccaaannnnnnnn-acaccgaaaacaaatgttttgagaacgcaaatagctctcaaca |
114 |
Q |
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| T |
34858225 |
gaaacaacttaaacttatcccataccttttcgatttctatccaccaaaaatttttttacaccgaaaacaaatgttttgagaacgcaaatagctctcaaca |
34858126 |
T |
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| Q |
115 |
tatatatcttgttgcaaattaacttataaaatcttagcacttatgataagaaatctcatatgacaagcatttactaaataaacgctttattaagttgttt |
214 |
Q |
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| T |
34858125 |
tatatatcttgttgcaaat-aacttataaaatcttagcacttatgataagaaatctcatatgacaagcatttactaaataaacgctttattaagttgttt |
34858027 |
T |
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| Q |
215 |
atccaaaagtgaccctagtcttaactttttcctaccaatgacacataatcaattgaaagaggccaaattccataagtgataagcaactgataacaaaaat |
314 |
Q |
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| T |
34858026 |
atccaaaagtgcctcttgtcttaactttttcctaccaatgacacataatcaattgaaagaggccaaattccataagtgataagcaactgataacaaaaat |
34857927 |
T |
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| Q |
315 |
aaggaatgaagtatagtttcttaaccaacagtccagttatggctagcacagccaaagagttcttgatgtccattggtg |
392 |
Q |
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| T |
34857926 |
aaggaatgaagtatagtctcttaaccaacagtccagttatggctagcacagccaaagagtccttgatgtccattggtg |
34857849 |
T |
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