View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_high_2 (Length: 388)
Name: NF16598_high_2
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 85 - 374
Target Start/End: Complemental strand, 43104213 - 43103922
Alignment:
| Q |
85 |
ataaaatcacatcttatcatatagatatttgtaannnnnnnn--ctttctattgacacatttctccccctcgaatgacaaacagggaaaggtgatggaaa |
182 |
Q |
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| T |
43104213 |
ataaaatcacatcttatcatatagatatttgtaattttttttttctttctattgacacatttctccccctcgaatgacaaacagggaaaggtgatggaaa |
43104114 |
T |
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| Q |
183 |
tgtttcaaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttgccctagtctaaagctcaaagagagtga |
282 |
Q |
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| T |
43104113 |
tgtttcaaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttgccctagtctaaagctcaaagagagtga |
43104014 |
T |
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| Q |
283 |
ttatttgatgcctagaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatg |
374 |
Q |
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| T |
43104013 |
ttatttgatgcctagaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatg |
43103922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 188 - 374
Target Start/End: Complemental strand, 43107334 - 43107145
Alignment:
| Q |
188 |
caaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttgccctagtctaaagctcaaagagagtgatt--- |
284 |
Q |
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| T |
43107334 |
caaaattcacttgatgatgaaggaaagaagaaattcatctacctagaagatggaaataatgacttttgtcctagtttaaacctcaaagagagtgattgat |
43107235 |
T |
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| Q |
285 |
-atttgatgcctagaatgaactttgcattgagtgatttagtatctaaaaattcaaatgacattaaggcacatgtacatggttggagagatg |
374 |
Q |
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| T |
43107234 |
tatctcatgcctaga-tgaactttcaattgtttgattttgtctctaaaaattctaaagacataaaggcacatgtacatggttggagagatg |
43107145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 43104324 - 43104244
Alignment:
| Q |
11 |
atacttcatgttatgtagagctagagcagcttctatattgagttaatatac----ttttaactttataaaataaaaatata |
87 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43104324 |
atacttcatgctatgtagagctagagcagcttctatattgagttaatatactttgttttaactttataaaataaaaatata |
43104244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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