View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_high_4 (Length: 250)
Name: NF16598_high_4
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3245940 - 3246179
Alignment:
| Q |
1 |
attttatgtattctttgaagtgatttgctcaaattttgtgataatttgagattaaccaattaatttgatacacaacaaattagtgataatgaagcatacc |
100 |
Q |
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| T |
3245940 |
attttatgtattctttgaagtgatttgctcaaattttgtgataatttgagattaatcaattaatttgatacacaacaaattagtgataatgaagcatacc |
3246039 |
T |
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| Q |
101 |
aaactttcatcattaggttgagttcgtacaaagacttgtagtggcttttgtgctgtgggaaactctagtcttgctcttttgcttgaatcaatgttaggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3246040 |
aaactttcatcattaggttgagttcgtacaaagacttgtagaggcttttgtgctgtgggaaactctagtcttgctcttttgcttgaatcaatgttaggta |
3246139 |
T |
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| Q |
201 |
ttgacccaatttgatgatttgaacttatgattcccctatg |
240 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
3246140 |
ttgactcaatttgatgatttgaacttatgattcccctatg |
3246179 |
T |
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