View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_10 (Length: 422)
Name: NF16598_low_10
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 42183401 - 42183004
Alignment:
| Q |
11 |
atgaaagaagatgagaaggaacaggaagtgaagccatcaagtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggagg |
110 |
Q |
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| T |
42183401 |
atgaaagaagatgagaaggaacaggaagtgaagccatcaagtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggagg |
42183302 |
T |
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| Q |
111 |
ataccctattcctattgaagccgccattccacctgctgtgacaacaacaaacacaagtatgttcagacttcagaaacttgtacagaacnnnnnnngttct |
210 |
Q |
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| T |
42183301 |
ataccctattcctattgaagccgccattccacctgctgtgacaaccacaaacacaagtatgttcagacttcagaaacttgtacagaactttttttgttct |
42183202 |
T |
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| Q |
211 |
gatcactacttatttttctatatattattgattgatggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgt |
310 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183201 |
gaccactacttatgtttctatatattattgattgatggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgt |
42183102 |
T |
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| Q |
311 |
gaaaaggttgaaaatttaaggatacaccgccattatcaatgatagcattagcacctagagcagaagaatcacccccaaaagacatgttgtatgttgtg |
408 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183101 |
gaaaaggttgaaaatttaaggatacaccaccattatcaatgatagcattagcacctagagcagaagaatcacccccaaaagacatgttgtatgttgtg |
42183004 |
T |
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