View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_14 (Length: 315)
Name: NF16598_low_14
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 2366676 - 2366391
Alignment:
| Q |
14 |
atcaccagaaaaataacaaagatttagtaacctacccgtacaaatctttaagcagtgatgatgagtgggtttgagagggttttgatgcgtttatgatgca |
113 |
Q |
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| T |
2366676 |
atcaccagaaaaataacaaagatttagtaacctacccgtacaaatctttaagcagtgatgatgagtgggtttgagagggttttgatgcgtttatgatgca |
2366577 |
T |
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| Q |
114 |
tttgatgggttttaggatgggtactgaatgggtctagagtttcgatggaagaaattagagggaaattaaaatataagtgcatcaaattgaatgtgagcag |
213 |
Q |
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| T |
2366576 |
tttgatgggttttaggatgggtactgaatgggtctagagtttcgatggaagaaattagagggaaattaaaatataagtgcatcaaattggatgtgagtag |
2366477 |
T |
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| Q |
214 |
-gnnnnnnntgtaaatactgaggggtgttcggggt-tgctttggatcgatattaagaaaagaaaaaaggttatccaatctaaaata |
297 |
Q |
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| T |
2366476 |
aaaaaaaaatgtaaatactgaggggtgttcggggtctgctttggatcgatattaaaaaaagaaaaaaggttatccaatctaaaata |
2366391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 2372216 - 2372071
Alignment:
| Q |
22 |
aaaaataacaaagatttagtaacctacccgtacaaatctttaagcagtgatgatgagtgggtttgagagggttttgatgcgtttatgatgcatttgatgg |
121 |
Q |
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| T |
2372216 |
aaaaagaacaaagatttagtaatttaccggtccaaatcttaaagcagtgacgatgagtgggtttgagagggttttgataagtttgcgatgcatttgatgg |
2372117 |
T |
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| Q |
122 |
gttttaggatgggtactgaatgggtctagagtttcgatggaagaaa |
167 |
Q |
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| T |
2372116 |
gttttgggataggtactgaatgggtctagggtttcaacggaagaaa |
2372071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 12114536 - 12114622
Alignment:
| Q |
75 |
tgagtgggtttgagagggttttgatgcgtttatgatgcatttgatgggttttaggatgggtactgaatgggtctagagtttcgatgga |
162 |
Q |
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||||||| | ||||||| |||||| | ||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
12114536 |
tgagtggatatgagaggattttgaagggtttacaatgcatttgatgggtttg-ggaagggtactgaatgggtctagggtttcgatgga |
12114622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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