View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_16 (Length: 287)
Name: NF16598_low_16
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 35364188 - 35363944
Alignment:
| Q |
18 |
aacaaaagattggtgtttgttgaacgtgttcctataatttttccttccattatgaatcagagggagcgaagacagtgacagaaggtgaatgttcaatcca |
117 |
Q |
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| T |
35364188 |
aacaaaagattagtgtttgttgaacgtgttcctatagtttttcctcccattatgaatcagagggagtgaagacagtgacagaaggtgaatgttcaataca |
35364089 |
T |
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| Q |
118 |
taaaagcaattagagggatttc-nnnnnnntcattggaaggtgattgtcatgatcgttgatgatctagatcggtattcatcgtaatattcattgattttg |
216 |
Q |
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| T |
35364088 |
taaaagcaattagagggatttcaaaaaaaatcattggaaggtgattgtcatgatcgttgatgatctagatcggcattcatcgtaatattcattgattttg |
35363989 |
T |
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| Q |
217 |
gattggatgtattga--tctctctcccatctaattatttctctga |
259 |
Q |
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| T |
35363988 |
gattggatgtattgatctctctctcccatctaattatttctctga |
35363944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 32662635 - 32662747
Alignment:
| Q |
96 |
cagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatctagatcggtattca |
195 |
Q |
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| T |
32662635 |
cagaaggtgaatgttcaatccgtaaaagcaattagatagatttcaaaacattcactagaaggtgattgtcatgatcgttgctgatctagatcggtattca |
32662734 |
T |
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| Q |
196 |
tcgtaatattcat |
208 |
Q |
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|| |||||||||| |
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| T |
32662735 |
tcataatattcat |
32662747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 32656111 - 32656147
Alignment:
| Q |
96 |
cagaaggtgaatgttcaatccat-aaaagcaattaga |
131 |
Q |
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| T |
32656111 |
cagaaggtgaatgttcaatccataaaaagcaattaga |
32656147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 21786651 - 21786803
Alignment:
| Q |
84 |
cgaagacagtgacagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatcta |
183 |
Q |
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| T |
21786651 |
cgaagacagtggcggagggtgattattcaatcgatacaagcaattagagggatttttaaaaattcaccggaaggtgattgtcatgatcgttgatgatcta |
21786750 |
T |
|
| Q |
184 |
gatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
238 |
Q |
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||| ||||||| || |||||||||||| ||||||| ||||||| | ||||||| |
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| T |
21786751 |
gataggtattcttcataatattcattg--gttggattcgatgtatcggtctctct |
21786803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 38682039 - 38682108
Alignment:
| Q |
167 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
238 |
Q |
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| T |
38682039 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38682108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 38683292 - 38683361
Alignment:
| Q |
167 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
238 |
Q |
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| T |
38683292 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38683361 |
T |
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