View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16598_low_18 (Length: 246)

Name: NF16598_low_18
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16598_low_18
NF16598_low_18
[»] chr3 (12 HSPs)
chr3 (18-234)||(679860-680076)
chr3 (18-234)||(747778-747999)
chr3 (25-173)||(755292-755445)
chr3 (30-189)||(2475887-2476051)
chr3 (21-100)||(9595282-9595361)
chr3 (25-190)||(2474346-2474516)
chr3 (25-189)||(7334931-7335100)
chr3 (25-189)||(9566482-9566651)
chr3 (18-74)||(9562616-9562672)
chr3 (33-189)||(7325065-7325226)
chr3 (167-211)||(2634861-2634905)
chr3 (21-189)||(7443650-7443823)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 679860 - 680076
Alignment:
Q  18 ccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  679860 ccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagagg 679959  T
Q  118 catcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  679960 catcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggtggcggagatgttatggttccagcc 680059  T
Q  218 gtatggacgatgatgtc 234  Q
    |||||||||||||||||    
T  680060 gtatggacgatgatgtc 680076  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 747778 - 747999
Alignment:
Q  18 ccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagagg 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  747778 ccaagaggttatcatgaggtggtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagagg 747877  T
Q  118 catcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttc 212  Q
    |||||||||||     ||||||||||||||| ||||||||||| ||||||||  ||||||||  ||||||||||||||||||||||||||||||||||||    
T  747878 catcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgggaagtggcggcggagatgttatggttc 747977  T
Q  213 cagccgtatggacgatgatgtc 234  Q
    ||||||||||||||||||||||    
T  747978 cagccgtatggacgatgatgtc 747999  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 755292 - 755445
Alignment:
Q  25 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 124  Q
    |||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||       |||||||||||| || |    
T  755292 gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgca 755391  T
Q  125 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga 173  Q
    | ||     ||||||||||||||| |||||  ||||||||||| ||||||||||    
T  755392 gctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga 755445  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 2476051 - 2475887
Alignment:
Q  30 catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- 128  Q
    |||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| |||||||||||       |||||| ||||| ||||| ||     
T  2476051 catgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcaccgaagctgt 2475952  T
Q  129 ----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 189  Q
        |||||||||  || ||||||   ||||||||||| |||||||| ||| |||||||||||||    
T  2475951 acgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag 2475887  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 9595282 - 9595361
Alignment:
Q  21 agaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat 100  Q
    ||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| |||||||||||    
T  9595282 agaggctatcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatcagaaataagagaat 9595361  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 2474516 - 2474346
Alignment:
Q  25 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 124  Q
    |||| |||||||| |||||||||  |||||||||||||||| |||||||||||| | ||||  | ||| | |||||       |||||||||||| ||||    
T  2474516 gttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaagaacttacagaggcaccgaa 2474417  T
Q  125 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagt 190  Q
    | ||     ||||||||| ||||| ||||| |||||||||||| |||| ||| ||| ||||||||||||||    
T  2474416 gctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt 2474346  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 7334931 - 7335100
Alignment:
Q  25 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 124  Q
    |||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||  |||| |||||       ||||||||| |||||||    
T  7334931 gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaa 7335030  T
Q  125 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 189  Q
    | ||     ||||||| |  |||| |||||  ||||||||||| |||||||| ||  ||||||| |||||    
T  7335031 gctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag 7335100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 9566482 - 9566651
Alignment:
Q  25 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 124  Q
    |||| ||||||||  |||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||       ||| |||||||| ||||    
T  9566482 gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaa 9566581  T
Q  125 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 189  Q
    | ||     ||||||| ||||||| |||||  ||||||||||| | |||||||||| ||||||| |||||    
T  9566582 gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag 9566651  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 9562616 - 9562672
Alignment:
Q  18 ccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc 74  Q
    ||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||    
T  9562616 ccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc 9562672  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
Q  33 gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- 128  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | |||||       |||||||||||| ||||| ||        
T  7325065 gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg 7325164  T
Q  129 -gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 189  Q
     ||||||| |  |||| ||| | |||||||||||| | |||||||||  ||||||| |||||    
T  7325165 agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag 7325226  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
Q  167 acatcgaagagaagagtgggaagtggcggcggagatgttatggtt 211  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||    
T  2634905 acatcgaacggaagagtcggaagtggcggcggagatgttatggtt 2634861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 7443650 - 7443823
Alignment:
Q  21 agaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcat 120  Q
    |||||||| |||||||  |||  |||| | ||| ||||||| ||||||||| |||||  | ||||||| ||| | |||||       ||||||||||||     
T  7443650 agaggttaccatgaggcggtgatgcttggctgaaaattgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaacttacagaggcac 7443749  T
Q  121 cgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 189  Q
    ||||||||     ||||||| |  |||| ||| | ||||||||||||||||| ||||||| |||||||||||||    
T  7443750 cgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaag 7443823  T

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