View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16598_low_2 (Length: 583)
Name: NF16598_low_2
Description: NF16598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16598_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 48 - 564
Target Start/End: Complemental strand, 33022316 - 33021803
Alignment:
| Q |
48 |
accagagttgaatcttttgataacagcaattgaacccgaccaccaacacggtaacatgccagtataccgacagttcactattcaacaacaaataaaaggt |
147 |
Q |
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| T |
33022316 |
accagagttgaatcttttgaaaacagcgcttgaaccataccgccaacatggtaacgtgtctgtatacagacagttcgctattcaacagcaagttaaaggt |
33022217 |
T |
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| Q |
148 |
catttctagcctatctgtctggatccaatcacaaaggatcgaaacaaatttaagaccattccaaaattccccagagcgacagaagcaatctgtatgcatc |
247 |
Q |
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| T |
33022216 |
cgtttctagcctatctgtccgaattcaatcacgaaggattgaaaccaatttaagaccattccaaaattcccctgagcagcagaagcaatctgtatgcatt |
33022117 |
T |
|
| Q |
248 |
gacaccagcaaatctcaacagacctagaatagaatcaagtaaccaatgccataaaagcaaaccaccaatcaaatccaacacaaccctaccaaccttactg |
347 |
Q |
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| T |
33022116 |
gacaccagcaaatctcaatagacctagaatagaatcaagtcaccaatgccagaaaagcaaactgccaatcaaatccaacacaaccctaccgacccgactg |
33022017 |
T |
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| Q |
348 |
tgaaagcacatatatttgtctatatatatatcaactattgacagaactagaaacatcatttatgctttcaaatattgaagtttccacaaggaatgtgacc |
447 |
Q |
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| T |
33022016 |
cgaaagcacatatatttgtcaatatatatatcaccttttgacagaactaaaaacaccatttatgctttcaaatattgaagtttccacaaggaatgtaaaa |
33021917 |
T |
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| Q |
448 |
aaagaaatgatatactgaatatgtaaagtgccatattttggacttgtaatcctcatcatggaagacatgacaacttgaacaaaggagacttaatttgtta |
547 |
Q |
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| T |
33021916 |
aaagaaattacatactgaagatgtaaagtgccattttttttacttgtaa---tcatcatggaagacagtacaacttgaacaaaggagacttaatttgtta |
33021820 |
T |
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| Q |
548 |
ttggaagatgaattcta |
564 |
Q |
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| T |
33021819 |
ttggaagatgaattcta |
33021803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 119 - 340
Target Start/End: Complemental strand, 33028515 - 33028294
Alignment:
| Q |
119 |
agttcactattcaacaacaaataaaaggtcatttctagcctatctgtctggatccaatcacaaaggatcgaaacaaatttaagaccattccaaaattccc |
218 |
Q |
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| T |
33028515 |
agttcactattcaacaacaaataaaaggtcatttctagcctatctgtctggatccaatcacaaaggatcgaaacaaatttaagaccattccaaaattccc |
33028416 |
T |
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| Q |
219 |
cagagcgacagaagcaatctgtatgcatcgacaccagcaaatctcaacagacctagaatagaatcaagtaaccaatgccataaaagcaaaccaccaatca |
318 |
Q |
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| T |
33028415 |
cagagcgacagaagcaatctgtatgcatcgacaccagcaaatctcaacagacctagaatagaatcaattaaccaatgccgtaaaagcaaaccgccaatca |
33028316 |
T |
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| Q |
319 |
aatccaacacaaccctaccaac |
340 |
Q |
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| T |
33028315 |
aatccaacacaaccctaccaac |
33028294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 379 - 564
Target Start/End: Complemental strand, 33028297 - 33028112
Alignment:
| Q |
379 |
caactattgacagaactagaaacatcatttatgctttcaaatattgaagtttccacaaggaatgtgaccaaagaaatgatatactgaatatgtaaagtgc |
478 |
Q |
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| T |
33028297 |
caactattgacagaactagaaacaccatttatgctttaaaatattgaagtttccacaaggaatgtgaccaaagaaatgatatactgaatatgtaaagtgc |
33028198 |
T |
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| Q |
479 |
catattttggacttgtaatcctcatcatggaagacatgacaacttgaacaaaggagacttaatttgttattggaagatgaattcta |
564 |
Q |
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| T |
33028197 |
catattttggacttgtaatcctcatcatggaagacatgacaacttgaacaaaggagacttaatttgttattggaagatgaattcta |
33028112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 438 - 564
Target Start/End: Complemental strand, 33039560 - 33039433
Alignment:
| Q |
438 |
gaatgtgaccaaagaaatgatatactgaatatgtaaagtgccatatttt-ggacttgtaatcctcatcatggaagacatgacaacttgaacaaaggagac |
536 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||| | |||||||| ||||||||||||||||||||| |
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| T |
33039560 |
gaatgtgaccaaagaaatgacatactgaatttgtaaagtgccatttttttggacttgtaatcctcattagggaagacaggacaacttgaacaaaggagac |
33039461 |
T |
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| Q |
537 |
ttaatttgttattggaagatgaattcta |
564 |
Q |
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| T |
33039460 |
taaatttgttattagaagatgaattcta |
33039433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 33028640 - 33028548
Alignment:
| Q |
13 |
aatatctttcaagtaatttgcaacaatatacccctaccagagttgaatcttttgataacagcaattgaacccgaccaccaacacggtaacatgc |
106 |
Q |
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| T |
33028640 |
aatatctttcaagtaatttgcaacaatataccc-taccagagttgaatcttttgataacagcaattgaacccgaccatcaacacggtaacatgc |
33028548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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